Full transcript
Intro
0:00There's a really deep and interesting
0:01thing about plenarian, but let's talk
0:02about head and tail decisions. In most
0:04textbooks, what you'll see is they show
0:05the worm being cut into thirds. So
0:07there's like two cuts and then they draw
0:09this like gradient and they say, "Well,
0:11this is how you know where the head and
0:12tail is." That's all well and good, but
0:14what they're neglecting to show you is
0:16the simpler but much more challenging
0:18version of one cut. Because if you make
0:21one cut in the middle, the cells on the
0:23left side of the cut are going to make a
0:24tail. Cells on the right side of that
0:26cut are going to make a head. Their
0:27positional information is exactly the
0:29same. they were neighbors until you came
0:30with your scalpel and cut them apart.
0:31And just purely logically, you can't
0:33tell locally whether you should be a
0:35head or a tail. You have to communicate
0:37with the rest of the tissue. I wanted to
0:38have one giant eyeball. I wanted the
0:40whole thing to be one giant eyeball. So,
0:42what I would do is I would go in and
0:43inject like an eight cell embryo. I
0:44would inject every single cell like,
0:46"Okay, this thing's going to be a giant
0:47eye." No, you can get multiple eyes, but
0:49you will never get a bigger eye. There's
0:51something that we haven't cracked yet
0:52where they know what the size is. The
0:54first two-headed worms were seen around
0:561903, made by a completely different
0:58process. Nobody had thought to recut
1:00them for over a hundred years. Why?
1:04Because everyone thought it was obvious
1:05what would happen. This week, Michael
1:07and Shingu spoke with Dr. Michael Levan
1:09about how bioelectric signals guide
1:11development, regeneration, and
1:13collective cellular decision-making.
1:15Levven explains how voltage patterns
1:17help tissues determine body structure,
1:19why cells communicate like networks, and
1:21how manipulating bioelectricity can
1:23induce regeneration, alter anatomy, and
1:25even create two-headed plenarian worms.
1:28We also discuss morphagenesis, memory,
1:30and living systems, and the possibility
1:31that biology operates through high level
1:33information processing far beyond
1:35genetics alone.
1:37>> Cool.
1:38>> Please welcome Mike Leaven.
Early Interest in Bioelectricity
1:40>> Start was actually really early. I was
1:42interested uh from an extremely early
1:43age in uh engineering in biology. I
1:47spent a lot of time looking at bugs and
1:49insects, you know, when I was a a kid
1:51and um thinking about the difference
1:53between the things I was building uh
1:54with electronics and later computers and
1:57the living things that put themselves
1:58together and have preferences about what
2:00happens and all of that. And so for the
2:01longest time uh I was kind of interested
2:04in this big question of how minds exist
2:06in the physical universe, how they
2:08scale, how they change, what you know
2:10what happens and all of that. And um
2:12what I was always looking for is what I
2:14now call cognitive glue, which is the
2:17policies and mechanisms that take parts
2:19and come together to be a whole that
2:21knows things and and has goals and
2:23preferences that the individual parts
2:24don't have. And I've always wondered
2:26what what that was. And uh we we we kind
2:29of knew what it was in neuroscience,
2:31right? So it's the it's the
2:33electrophysiology of the of the neural
2:34networks and so on that that uh are are
2:37critical for for those kinds of things.
2:38But we didn't really know what it was in
2:41in development. And in 1986,
2:44I was at the Vancouver World's Fair with
2:46my dad and we went into a used bookstore
2:48as we did all the time and we found uh
2:51Robert Becker's The Body Electric. It's
2:53a book and it's it's a book that you
2:54know kind of well well known um in the
2:56field. Now the most interesting thing to
2:58me in that book was a bibliography going
3:02back decades showing that people were
3:04thinking about this already and doing
3:06experiments and there's a whole there's
3:07a whole history of developmental bio
3:09electricity and it occurred to me that
3:10this was this was kind of a perfect uh
3:14you know a perfect merger of of the
3:16things I was interested in because not
3:17only does it answer an evolutionary
3:19question which is where did the brain
3:21learn its amazing tricks right so so
3:23clearly it was much older than that and
3:24and and was here long before neurons and
3:26and brains appeared. But also uh this it
3:30it enabled us to have a kind of uh entry
3:33point to understand how do morphagenetic
3:36systems make decisions. In other words,
3:38beyond just the chemistry of the
3:40mechanisms, the question that we always
3:41ask when we look at embryos like how
3:42does it know? How does it know how many
3:44fingers? How does it know? So we had a
3:45standard story that that basically all
3:48of the parts work together according to
3:50the laws of chemistry. Everything is a
3:52dumb machine. Nothing actually knows
3:53anything. and the resulting outcome is a
3:56sort of emergent consequence of of what
3:58happens. But uh I and many others were
4:00very suspicious of that story and it
4:02seemed to me that um bioelect
4:03electricity by taking uh inspiration
4:06from what we learn in neuroscience about
4:08top- down causation and multiscale kinds
4:10of decision-m and so on. It seemed like
4:12that was a perfect way to address it.
4:13And so that was that that's that's
4:15pretty much when when my plan really
4:17crystallized around what I wanted to do.
4:19But but the interest goes back much
4:21earlier than that.
4:22>> So this was pre-undergraduate studies.
4:23Did you already go into your
4:24undergraduate studies thinking that you
4:26wanted to in high school that you wanted
4:28to combine electronics that you were
4:30playing around with with uh biological
4:32questions or even more so um uh
4:36questions of consciousness potentially?
4:38>> Yeah, even even long before that as a as
4:40a teenager I I was doing behavioral
4:42experiments with you know worms and and
4:44and tadpoles and things like that. I'm
4:46trying to understand um how they see
4:48their world and things like that. And
4:50this is this is this that that became my
4:52dream is to uh sort of advance the
4:54science in that direction. I didn't
4:56really think it was realistic or
4:57possible, but I figured I would do as
4:59much as I could and you know and see and
5:00see how far I could I could push it. And
5:02what was then the first experiment that
5:04you designed and did yourself that was
5:05in this direction?
5:08>> The well as a as as an undergrad I I I
5:10didn't have access to any uh you know
5:13serious equipment and things like that.
5:15But um what we did what I did do was to
5:18look at the effects of exogenous fields.
5:20So in that in that case electromagnetic
5:21fields on sea urchin development. So so
External Electric Stimulation
5:23there are two limitations to that
5:25method. The first limitation is that
5:26this is exogenous stimulation. So
5:28whatever you find uh you don't know that
5:31this has anything to do with how the
5:32system normally controls itself. What
5:34you found is perhaps a cool engineering
5:36trick and and maybe you've maybe you've
5:38learned something no doubt but it wasn't
5:39the same as asking um how does the
5:41system control its own parts? How do
5:43parts come together? How is information
5:44integrated in the in the system? How are
5:46decisions made? So external stimulation
5:49is not sufficient for that. Also
5:51external stimulation is is a blunt tool.
5:53In other words, for for sure you can do
5:55some amazing things and people have, you
5:56know, the the the kind of my heroes in
5:59this field have done incredible work on
6:00on showing all kinds of phenotypes that
6:02made it clear that something important
6:04was going on. But but the limitation of
6:06it is that after when you've applied a
6:08field, you don't know exactly what
6:09you've done mechanistically. In other
6:11words, biological tissue, the impedance
6:13is very complex. And so where do the
6:14currents go? What happens to the cells?
6:17You know, how are they affected and all
6:19of that? It's very hard especially with
6:20magnetic fields because that goes every
6:22you know the ELFs go everywhere and so
6:24you can't you have no real spatial
6:26control over it. Um yeah, I wanted to uh
6:29this was part of my strategy afterwards
6:31uh as a uh as a postto develop the first
6:35molecular tools to really do to to
6:37really address endogenous native
6:40biological signaling, no external
6:42stimulation, no magnets, no no magnetic
6:44component just to understand um how the
6:46system controls itself. And um I suppose
6:49it was quite obvious then from the
6:50beginning that you would focus on gap
6:52junctions and membrane potentials or ion
6:54channels. So how to manipulate them or
6:57how did you create your toolbox?
6:59>> Yeah. Well, it wasn't obvious at all.
7:00These were very hard choices because
7:02because until now um or until then most
7:04people were studying uh electric fields
7:07and some people were studying ion
7:08fluxes. So um Lionel Jaffy and Rich
7:12Nutelli uh designed this thing called
7:13the the vibrating probe. Yeah. At
7:15Purdue. Yeah. They designed this thing
7:16called the vibrating probe which allowed
7:18you to uh characterize ion fluxes and
7:21and those were very important but I
7:23really thought that um for a number of
7:25reasons I thought that what we should be
7:26looking at is resting potential voltage
7:28gradients which is which is quite
7:29different right from from either of
7:31those and so so I focused on two things
7:33I focused on ways to characterize the
7:36voltage potential non-invasively until
7:38then you could do it with electrodes so
7:39standard electrophysiology you poke the
7:41cell with little glass needles but the
7:42problem is it it's invasive you only get
7:44one cell at a time if the cell moves or
7:46divides uh you know you can forget it
7:48and you can't get the whole the whole
7:49embryo right so so what I wanted to do
7:52was to look at uh voltage sensitive dyes
7:54fluorescent dies that allow you to
7:56non-invasively soak the whole the whole
7:57thing and get um images and videos of of
8:00what's going on so that's the that's the
8:01side of reading the information and then
8:03in terms of writing the information I
8:05wanted to manipulate um the way that the
8:08cells endogenously create and change
8:11that potential which meant ion channels
8:13and so ion channels ion pumps and So as
8:15a as a posttock I began to assemble this
8:18this toolkit and what I would do is uh I
8:21would I would um contact various
8:23neuroscientists in the field and I would
8:24ask them for plasmids for their ion
8:26channels. So so at first at first uh I I
8:28told people why I wanted it. Uh in other
8:30words I said I was going to try to
8:31misexpress these in other places in the
8:33embryo to have uh control over the
8:36resting potential and thus study by
8:37electricity. I stopped I stopped doing
8:39that because my boss Mark Mola my postto
8:42mentor came in one day and he was
8:43laughing and he had a letter in his hand
8:44and he said he said uh one of the people
8:46that I had emailed wrote him a letter
8:48and warned him that one of his postocs
8:50was basically dangerously insane and
8:52that and that and this was such a crazy
8:54like this was such a crazy idea. I only
8:56say that because nowadays it seems
8:58pretty obvious, but at the time this was
8:59considered completely nuts. Like to to
9:01to look at the the kind of uh
9:03neuroscience components outside of the
9:06nervous system seem seemed crazy to most
9:08people. So he was warning my boss to be
9:10careful that I was
9:10>> and this was not inest. He actually
9:12>> No, no, he was 100% serious. He was he
9:14was warning. I mean I get it as a PI
9:16now. I app I would appreciate the
9:17warning pace. It could be a waste of
9:20time or Yeah.
9:21>> Or worse or worse. Sometimes people have
9:22[laughter] nervous breakdowns, you know.
9:24So yeah, he was giving him a heads up
9:26and so and so I, you know, I stopped
9:28telling people why I want these things
9:29and I would just, you know, I would just
9:30ask for them and and and mostly
9:31everybody was nice and sent them out.
9:33And so that was and that was the
9:34toolkit. So the idea was to learn to
9:36manipulate the native interface, the way
9:38that the cells control each other, the
9:39way that the cells are hacking their own
9:42neighbors and the way that the system
9:43was collecting information. That that is
9:45that is where I wanted to uh pipe into
9:47that system. And then in practice once
9:49you received these dyes you would
9:50immerse the entire um embryo in it and
9:53then it would find find then the
9:55locations where it would accumulate and
9:57you would read it out through a
9:59microscope or what would be the
10:01experiment design.
10:02>> So there are two right so so the dyes is
10:04the um is the reading component that's
10:06reading the bioelectric code and
10:07actually the first the first person
10:09actually to do that was my collaborator
10:10Ken Robinson who was also a a great um
10:13you know a real hero of mine um in the
10:15field. He did tons of work in the 70s
10:16and 80s and 90s on this stuff. And um
10:19what we were working together on
10:21bioelect electricity of left right
10:22asymmetry in the chick the chick embryo
10:24at the time. And so he and his postoc
10:27Thorleaf Thorland um used the dyes to to
10:29to basically see the first asymmetric
10:32voltage gradient in the chicken um at
10:35the exact stage I told them it would be
10:36at because of my my predictions about
10:38left right asymmetry and how it would
10:40work and uh and and then then we used it
10:43on frog embryos and everything else. And
10:44so yeah, it's microscopy. So it's uh
10:46it's epifllororesence microscopy.
10:48Nowadays the tools are much fancier.
10:50There are better dyes of fret dyes and
10:52and flim and and um you know uh uh
10:55conffocal microscopy and and super
10:57resolution all that stuff. But at the
10:58time it was just it was just epif
10:59fluoresence. So that's so that's the
11:01reading part. The writing part is so
11:03what when you have a plasmid that
11:05encodes an ion channel uh the sequence
11:08what we would do is um in vitro
11:10transanscribe it. So you have your RNA
11:12and then you inject that RNA. where you
11:13micro inject it with a little pulled
11:15glass needle. You micro inject it into
11:16specific um precursor cells of the frog
11:18embryo
11:19>> and then um so that's that's one
11:21technique and then um
11:22>> you they would they would express and
11:24you put in a little tracer so you can
11:25see which cells exactly got it. That's
11:27that's one way to do it. You can do gain
11:29of function by putting in active
11:30channels. You can do loss of function by
11:32putting in dominant negative um channels
11:34that will inhibit you know native native
11:36channels. You can put in completely
11:38heterologous channels. That's the beauty
11:39of it. The cells are reading voltage.
11:41They don't care how it got there. So we
11:42used channels from yeast you know pumps
11:44from yeast and channels from other
11:46species all in you know all kinds of
11:48heterologous systems and then of course
11:50there are drugs right so so so the
11:52pharmarmacology of ion channel openers
11:54blockers all that stuff
11:56>> what led you to formulate your
11:57hypothesis about the left right
11:59asymmetry formation
12:01>> so as a as a grad student uh with cliff
12:03tabin I studied well we we character we
12:06we we discovered and characterized the
12:08first uh set of asymmetrically expressed
12:10genes so these were the first genes that
12:12are expressed on the left or the right
12:13side and they actually um there's a
12:15whole cascade where they turn each other
12:16on and off and then downstream they
12:19allow the different organs to know which
12:21side is left and which side is right and
12:22as a physicist you know you probably
12:24know this is a fascinating problem
12:25because at the macroscopic scale the
12:27universe doesn't distinguish left from
12:28right
12:29>> kyality like right fascinating right and
12:31so the question is how do embryos
12:33reliably know which side is is left and
12:35which side is right you can't get it
12:36from genetics because genes don't tell
12:38you which side is left and right right
12:40you need to you need to orient to to the
12:41outside world. And so [snorts]
12:43>> you need to introduce a symmetry
12:45breaking what is doing that in biology.
12:48>> Exactly. You need you need symmetry
12:49braking and then you need amplification
12:51because the symmetry breaking will tell
12:53each cell that way is left.
12:55>> But that doesn't tell you but I'm on the
12:57right side of the of a midline. Right?
12:59So it has to be again it's this I I was
13:00really interested in this because not
13:01only is it a cool physics problem um
13:04it's also uh uh again this like change
13:07of scale because it's one thing to know
13:08which direction is left and right but
13:10it's something else to know where am I
13:11relative to the rest of the of the
13:12embryo and that's actually um extremely
13:15important because all of morphagenesis
13:17is this kind of collective intelligence
13:19that integrates relative to a a a large
13:22scale target that individual cells don't
13:23know but the collective does
13:25>> and so and so I was very uh very
13:27interested so we so We found we found
13:29these these set of genes but then of
13:31course whichever earliest gene you have
13:34that is on one side or the other you
13:36have to ask well how did that one get
13:38expressed on so what's upstream of that
13:40and so that's what I that's what I
13:42decided to tackle as a postto and I
13:44started with a with a with a simple but
13:46but kind of interesting experiment what
13:48I did was I took the early frog embryo
13:50and I cut it in half and I cultured the
13:53two halves separately and we had by then
13:56because of my earlier work we had
13:57markers that were left-sided markers or
13:59right-sided markers. So, you could tell
14:00what does the tissue think it is? Does
14:02it think it's on the left and right? And
14:04what we found out is that if you
14:05actually segregate the two halves, they
14:08get confused.
14:09>> In other words, 50% of the time each
14:11each one would would do left side or
14:14right side. Actually, there were two
14:15interesting things. One is that
14:17>> the the tissue itself would get
14:18confused, but the cells would never get
14:20confused. In other words, you never saw
14:21speckles. You never saw, well, I think
14:23I'm left and the next cell overthinks
14:25I'm right. The whole tissue would be in
14:26agreement. The with and this came up
14:28again and again in my work later on but
14:30the tissue was in agreement it just
14:31wasn't cor you know half the time it
14:33wasn't correct
14:34>> the other half as the reference point so
14:36to speak that you took away
14:38>> yeah yeah so so what that told us is
14:40that you can't which is which actually
14:42contradicts a mainstream model in the
14:44field which is that individual cells can
14:46figure this out because of the kirality
14:48of psyia and things like that actually
14:50think it's got nothing to do with that
14:51um it means that indiv it means that uh
14:55small bits of tissue can't um uniquely
14:58determined left and right. They need to
14:59coordinate, right? You need to you need
15:00to have a have a communication between
15:02across actually across considerable
15:03distances, millimeters in that case.
15:06>> [snorts]
15:06>> And so and so I started to think okay
15:08how how would this be and and then and
15:10then uh that's when that's when the
15:12whole cap junction thing came up because
15:14I started to think that again borrowing
15:16some some ideas from neuroscience and uh
15:19just drawing a very simple you know my
15:22first my first model was was it was it
15:23was a very simple electric circuit where
15:25I thought okay if you have a battery at
15:27the vententral end of the embryo and the
15:29rest of the gap junctions kind of go
15:31into this so so so the embryo at that
15:33point was a flat sorry like a like a
15:34frisbee like a flat And so but there was
15:37a primitive streak like the special
15:38region down at the at the bottom and
15:40then and then all this stuff around if
15:42the if what was happening the battery
15:44was driving uh either current or or
15:46electropharesing something else around
15:48that's why you needed the whole thing
15:49because if you interrupt it anywhere
15:51along and I in fact I showed that if you
15:52make single cuts anywhere along the edge
15:54you would you would confuse it. So it
15:56had to communicate you know in in that
15:58way and so that was the first that was
16:00the first model of of a battery um in
16:02the frog it's a ventral side and the
16:03check it's the primitive streak
16:05>> and then a a gap junction path through
16:07which something is going under
16:08electropheretic force.
16:09>> So bioelect electricity basically um
16:12revealed itself as the answer to a
16:15question that you already had which is
16:16the left right asymmetry. Yeah, I I mean
16:19you know on on the one hand you might
16:21think uh this is tremendously lucky you
16:23know this this idea I mean bio
16:25electricity was something I was
16:26interested in for a long time my PhD
16:29project was not unusual or weird you
16:32know I mean it was it was unique in in
16:34many ways but back in those days I
16:35didn't talk about any of these ideas you
16:37know I was sort of taking the time to
16:38just learn the mainstream thinking that
16:40I need to you know learn how how to do
16:42things at the state-of-the-art level I
16:44could maybe break them later if I stayed
16:46in the field long enough but But but you
16:48know I was just doing like good you know
16:49standard molecular biology kinds of
16:51things. Um and uh it's kind of it was
16:55you know kind of tremendous of good
16:56fortune that that particular project
16:57lent itself immediately to applications
16:59in bio electricity. It didn't have to be
17:00that way. Uh but of course but but the
17:02flip side of that is that you know many
17:04people were studying um early
17:06development. Most people didn't look for
17:08bioelectric kinds of things because they
17:09weren't interested. Right. So it's you
17:11know I think I think it's partially my
17:13emphasis and partially luck.
17:14>> You said it led to applications. What
17:17were these applications that the first
17:19experiment led to?
17:22>> Well, uh the you know the fir the first
17:24experiment basically allowed us to
17:26design uh the tools that we then used
17:28again and again. So
17:29>> the dies and the yeah the dyes the
17:32strategies of uh putting in um different
17:35ion channels and pumps the strategies of
17:37changing the gap junctional paths
17:38because with molecular biology you could
17:40make gap junctions that were either
17:41opened or closed or had different
17:43permeabilities.
17:44uh to use the drugs use we I developed
17:47drug screens something called an inverse
17:49drug screen to identify in new contexts
17:52which um channels and pumps might be
17:54important which was very again very
17:56important because natively if you want
17:57the the mainstream molecular biology
17:59cell biology community to to pay
18:01attention they need to know where does
18:03the signal come from what are the genes
18:04that are important for it and I don't
18:06think the genes drive this process at
18:07all but but they do provide the hardware
18:09so you need to know what genes are
18:10important and then of course on the
18:12other end having Um, and that's
18:14something else that I that I developed
18:15is ways to chase it down. So that having
18:17said, okay, here is this uh voltage
18:19pattern that's important for this and
18:21that. How does it control cell behavior?
18:23So what are the what are the cell
18:24behaviors that are changed? What are the
18:25gene expressions that are changed? Like
18:27what else happens, right? So so being
18:29able to track that. So that was that was
18:30kind of the idea. I thought that if the
18:32only way that any of this would be
18:33successful is to merge it with the uh uh
18:37explosion of of of work in cell and
18:39molecular developmental biology. And
18:41that meant two things. That meant first
18:42of all addressing questions that they
18:44were interested in. So not just not just
18:47you know obscure um even if fascinating
18:49phenomena that they could sort of
18:51marginalize but actually like if you
18:52want to know why the gene Sonic hedgehog
18:54is on this side and not on that side the
18:57molecular explanation is not sufficient.
18:58You actually have to go up upstream of
19:00that and understand the biohysics that
19:02allows the whole thing to um to orient
19:04you know to in in space.
19:06>> And and the second thing is to tie it to
19:08the pathways that we're interested in.
19:10So, so do all of the characterization.
19:11What genes are downstream? What what
19:13genes are upstream? You know, what's the
19:14what's the how what is the interplay
19:16between the physics and the and the
19:17genetics.
19:18>> Was this controversial at all when you
19:20first uh suggested that there's
19:22something upstream of uh gene control?
19:25>> Oh, absolutely. Uh this was this was
19:27this was incredibly incredibly
19:28controversial. Um it's still it's still
19:30in in many corners. Um it is very
19:33controversial. Uh, amazingly enough, I
19:35mean, it's it's, you know, it's kind of
19:37remarkable. Uh, a few months ago, um, we
19:40published we published a paper in trends
19:42in genetics where we said things that
19:45were basically you couldn't say those
19:47things uh, even even recently, even a
19:48few years ago. I mean, I I'm amazed that
19:50we could say them now. But, um, but
19:52yeah, this was this was considered very
Two-Headed Planarians
19:54weird.
19:54>> I would feel bad if I didn't get out of
19:55this interview with with an
19:57understanding of this. So, you have the
19:58you have the plarium worm.
20:00>> Okay. uh you cut off the you cut off the
20:02tail or the head and then you
20:04>> or you cut it into thirds.
20:05>> Yeah, you cut it into thirds. You cut
20:06the middle part or whatever and then you
20:10uh how do you actually adjust the
20:12potentials on the end? Is it just
20:14soaking it in the drug or like what's
20:16the experimental design that leads to
20:18two heads for example?
20:19>> Right. So there's a couple ways to do
20:21it. So pleneria for a number of reasons
20:24are they they they a lot of techniques
20:26that work for example in our um frog
20:28model don't work in pleneria for for
20:30technical reasons their cells are tiny
20:32you can't inject them you can't there is
20:34no embryogenesis really available so you
20:36can't inject blasts like there's no
20:38transgenics it's a it's a it's a it's a
20:40very difficult system to work with so
20:42what you have left uh in pleneria are
20:44drugs
20:45>> and um the earliest uh way I I generated
20:49the two heads was the following
20:51There's a there's a really deep and
20:53interesting thing about about pleneria.
20:54So, so in most textbooks um well there's
20:58many amazing things about plenaryia but
20:59but but let's let's talk about head and
21:01tail decisions. In most textbooks, what
21:02you'll see is they show the worm being
21:04cut into thirds. Okay. So so there's
21:06like two cuts and then they draw this
21:08like gradient and they say well this is
21:10how you know where the head and tail is.
21:11It's because there's a there's a
21:13gradient and it's different. Okay.
21:14>> Like a voltage gradient.
21:15>> No, no. They're they're talking about a
21:16diffusion gradient of of you know W
21:18protein or something like that. Right?
21:21>> That's all well and good, but what
21:24they're neglecting to show you is the
21:26simpler but much more challenging
21:28version of one cut. Because if you make
21:30one cut in the middle, just cut them
21:31down the middle. The cells on the cells
21:35on the on the left side of the cut are
21:37going to make a tail. The cells on the
21:38right side of that cut are going to make
21:39a head. Their positional information is
21:41exactly the same. They were neighbors
21:43until you came with your scalpel and cut
21:44them apart. What gradient at that point,
21:46right? That that doesn't that doesn't do
21:47the trick. So that means that you can't
21:49just purely logically you can't tell
21:51locally whether you should be a head or
21:53a tail. You have to because because that
21:55information will be the same much like
21:56we talked about the left right
21:57asymmetry. You have to communicate with
21:59the rest of the tissue. So you have to
22:01say which you know is there already a
22:03head here? Am I on the other end? Where
22:04am I located right? And so I started to
22:06so I started to think and so we're
22:07talking this was like you know 2003 or
22:09so. I was thinking uh how is that
22:12coordinated? Well, my favorite thing,
22:14the gap junction. And so I said, "Okay,
22:15what if we just block gap junctions and
22:17so so pharmacologically you can you can
22:20block gap junctions." And that and the
22:21the the first experiment was was was
22:23just to block the gap junction. And sure
22:24enough, and this is this is the work of
22:26Taisakui, my one of my first postocs.
22:29Um, at the time uh yeah, that that's
22:32that's that's how we we got the the
22:33two-headed the two-headed worms. And
22:36something else something else just to
22:37just to point out there uh
22:41you know having worked with them for a
22:43few years 20078 um we recut them and
22:47that's it just you take the two-headed
22:49worms and you just cut them into pieces
22:50in plain water. No more no more drug no
22:52more no more.
22:53>> The first two-headed worms were seen
22:55around 1903 made by a completely
22:57different process. Nobody had thought to
22:59recut them for over a hundred years.
23:02Why? because everyone thought it was
23:04obvious what would happen. Their
23:06genetics are unchanged if you just get
23:07rid of that that ectopic secondary head.
23:09Of course, they're going to regenerate
23:10normally. Like, why would you even do
23:12this? So, this goes back to our to our
23:13earlier discussion of like thinking
23:15about these things in a different way
23:17makes you do different experiments,
23:18right? And so, we said, well, yeah, the
23:20genetics are the same, but but I didn't
23:22really believe that the genetics were,
23:23you know, were were storing all this
23:25stuff anyway. And so, I said, why don't
23:26we recut them and see what happens? And
23:27it turns out that two-headed worms, if
23:29you recut them, they make more
23:30two-headed worms. And if and and also
23:32when they reproduce naturally, which is
23:34to to tear themselves in half and
23:35regenerate, they also make two-headed
23:36worms. So that goes back like that's the
23:38one example I have where it actually
23:39does go crossgenerational. You know,
23:41that's that's you know, we know we know
23:43it does that.
23:43>> So So that's the first way we did it.
23:45More recently, we were able to do it
23:47with um specific voltage changes using
23:49ionophores. So these [snorts] are these
23:51are compounds that uh basically allow
23:55specific ions, protons or or potassium
23:57or whatever uh to cross in and out of
23:59cells. So you can, you know, you can
24:00make changes that Okay. So, so in
24:01plenary it's pharmacology basically.
24:03>> So the idea is you uh block the gap
24:07junctions. It doesn't know whether it's
24:09supposed to form a head or a tail. And I
24:10guess that how does it know in the end
24:12whether to make two tails or two heads.
24:14>> Uh the the standard so there's so
24:16there's two two things that are going on
24:18here. First thing is that uh by default
24:21if you're if you're a if you're a region
24:24and you are broadcasting hey uh is there
24:27a head here and nobody is the head then
24:30then then I'm going to make somebody has
24:31to make a head. So so you know so you do
24:33that that's that's the first thing. So
24:34in the in the absence of a head the
24:36default is make a head.
24:38>> Um that's the first thing. The second
24:39the second thing is that there's a
24:40particular biological pattern and it's
24:42it's not local but it's a large scale
24:43pattern that says how many heads are you
24:46supposed to have and what you can
24:47actually see and the coolest part to me
24:49the coolest part is that you can take a
24:50perfectly standard worm one head one
24:53tail
24:53>> and you can use the the ion force to
24:56change that biological pattern and you
24:58can confirm that on the on the voltage
24:59die that it now says two heads but that
25:01worm doesn't have two heads. So that's
25:03the most interesting part is that this
25:05is not a pattern of what the tissue is
25:08now. It's not a pattern that reflects
25:09the current anatomy.
25:11>> It's a um it's a counterfactual memory
25:15of what I will do if I get injured at a
25:17certain time. Right? It's the to what I
25:20think it is is and I think this is quite
25:22significant. It's a primitive form of
25:23the kind of mental time travel that
25:25we're able to do as as cognitive beings.
25:27So if you're an extremely primitive
25:29system, all you know is what's happening
25:31right now and you can react to that. But
25:33if you are are more um more
25:35sophisticated cognitive system, you can
25:37have thoughts about things that happened
25:38before. So memories, you can have
25:40anticipations about what will happen
25:41later. It's information that is not
25:44true. You can think about things that
25:45are not true right now. It's extremely
25:46powerful and they call it mental time
25:48trial. So I think this is a very simple
25:50version of that because that that worm
25:52if you look at it anatomically one head.
25:55If you look at molecular markers,
25:56perfectly normal, anterior markers in
25:58the head, posterior and the tail, no you
26:00wouldn't know. You wouldn't know
26:01anything was wrong until you looked at
26:03voltage. And it's kind of like um the
26:05neural decoding that neuroscientists try
26:06to do. You look at the voltage, you go,
26:07"Wait a minute. This thing this thing
26:08has a false memory. It thinks that it
26:10thinks that it should have two heads."
26:11But you won't know that it's a late
26:12memory until you injure it. As soon as
26:14you cut it, now you get two heads.
26:15>> Mhm.
26:15>> And so
26:16>> that's really cool.
26:17>> Yeah. I thought I Yeah, I think I think
26:18that's I think that's pretty neat.
26:20>> And can you impose that instruction
26:22after you've cut like when you do the
26:24thirds and you can just take the middle
26:26part and then encode that and it will
26:28still absolutely. So you can either do
26:30that before or
26:31>> Yeah. I mean there's a time limit
26:32because because if you wait too long, if
26:34you waitress
26:3712 hours, it's already decided what it's
26:39going to be and then it's too late. Um
26:40but but to address your your other point
26:42about the heads or tails, we eventually
26:44learned by by 2011 we had learned how to
26:47go to the tail fate. And so then we
26:49could make we could make no head worms
26:51or or in fact we could fix two-headed
26:53worms and send them back to being
26:54one-headed by changing the pattern back.
26:56>> But can you make eight heads? Can you
26:59take like sides of the worm and keep
27:01like growing?
27:02>> You you you can. There's a there's a tra
27:04we we did a we have a I think it's a
27:06developmental biology cover for Junji
27:08Morakuma's paper that has a four-headed
27:10worm that's the shape of a cross. It has
27:12[laughter]
27:13like that. Yeah, you can.
27:16>> So, okay. So, I have the two-headed
27:17worm. I cut it in half and it grows two
27:19heads again. How does the cut in the
27:21middle know to make a head? So, so what
27:25happens here and we're soon going to
27:27reach the limit of what we know because
27:28there's a lot that we don't know. What
27:30happens is that the electric the
27:32electric pattern in the tissue rescales.
27:34So, one of the most interesting things
27:36about this is that when you have a
27:37particular pattern that is worm sized,
27:40it's sized as the whole worm. You cut
27:41the thing into pieces. Each piece then
27:44re the pattern rescales in each piece.
27:46It's like it's like cutting a magnet
27:47basically, but it's but it's much more
27:48complex because it's not just two poles.
27:50It's not just head and tail. For
27:51example, we showed that you can make
27:52these heads these pleneria develop the
27:54heads of other species. So, so right.
27:57So, so it's not just that it's not just
27:58a dipole, but it's a similar thing in
28:01that you can cut it, but the pattern
28:03rescales and within within hours you'll
28:06see um you'll see that now you whatever
28:08pattern you had, you now have you now
28:09have here.
28:10>> So, the pattern that was in the head.
28:11So, I cut this thing in half. There are
28:13two heads. The pattern in the head ends
28:15up in the cut. Like
28:17>> it's not a it's not the pattern in the
28:19head. It's a it's it's a it's a pattern
28:22that's that's
28:23>> like the relative the relative change
28:25ends up it used to be from head to head
28:27then it's now it's cuts it rescales cuts
28:29ahead. That's uh that's crazy.
28:31>> Yeah. Yeah. Super super interesting. And
28:33we and we've been trying to we've been
28:34trying to computationally model that. Um
28:36we we have models that that do that. So
28:39you can make models of electric circuits
28:40that work that way. Uh right? Uh because
28:42because that's what's happening here.
28:44It's the pattern is it the whole thing
28:46is like RAM basically right? It's a it's
28:48a self sort of maintaining. Once you put
28:51in the pattern, it holds. As long as
28:52there's energy, the thing holds and and
28:54it and it it maintains and it rescales
28:57and it has some properties. We we have
28:58computational models that work like
28:59that. Um but but testing them
29:02specifically in the in the worm is hard
29:04because of the limitations of the
29:05plenarian model and and those are
29:07actually it's really interesting why
29:08they're they're limited like that.
29:10>> If you wanted to make a lot more heads,
29:12sorry, I'm stuck on that.
29:14>> How many heads would [laughter] you
29:14like?
29:16Do do you reach a saturation point at
29:18some point where one um head says, "Oh,
29:21there's a head already next to us, so
29:23we're not going to turn it into
29:24>> You do." And you do, and it's very
29:26interesting. The size control is very
29:28interesting here. Um, we can make
29:30ectopic eyes. We've never succeeded in
29:33making an eye that's bigger than a
29:34normal eye. [clears throat]
29:35>> They know exactly what size they should
29:37be. We have not cracked the size
29:39control. If you I tried at at first I
29:41tried I wanted to have one giant
29:43eyeball. I wanted the whole thing to be
29:44one giant eyeball. And and and if you do
29:47that, and this is the fun.
29:50>> Yeah. Uh if you [laughter] if you So
29:52what I would do is I would I would go in
29:53and and inject like an eight cell
29:55embryo. I would inject every single cell
29:56like, "Okay, this thing's going to be a
29:58giant eye." No, you can get multiple
29:59eyes, but you will never get a bigger
30:01eye. The eye there's something that we
30:03haven't cracked yet. That's that where
30:04they know what the size is. And it's
30:06very important too because um in
30:09pleneria for example this this again
30:10shows you the difference between the
30:12molecular approaches and the bioelectric
30:14approaches there are um there are uh you
30:18know standard ways of manipulating the
30:20wind pathway where you get ectopic heads
30:21in pleneria when you do that the head is
30:24not the right size compared to the rest
30:26of the body. Eventually they might
30:27rescale but but it's not the right size
30:29because you have to specify the size
30:31yourself and the identity and the wind
30:33protein or the wind signaling apparently
30:35only specifies the identity doesn't you
30:37you didn't control for the size. The
30:38biomectrics is not like that. When you
30:40make a
30:41>> when you make a second head via via
30:43bielectric control everything is
30:44perfectly matched. The size you know
30:47everything is perfect because because
30:48you're at a higher level right because
30:50you're not down here where you have to
30:51micromanage these other things. You're
30:52you're you're up at a higher level of
30:53control. So, so the size control is
30:56really interesting. Heads absolutely
30:58will um sort of demarcate themselves and
31:01there's a minimal size that and there's
31:03something else here which is the
31:04standard model in the field says that
31:07heads suppress heads. So that once you
31:09do have a head it sends out some sort of
31:11a suppressive signal that then
31:13suppresses heads somewhere else. But if
31:15you cut the head like this, right, if
31:17you cut it, you know, this way, this
31:19side of the head will will regenerate.
31:21Well, it'll make two heads if you keep
31:23recutting. You have to It's like the
31:24high school experiment. You get a Y. You
31:26have to keep recutting. You have to
31:27prevent them from joining. But let's say
31:29you cut and you get rid of one side.
31:31This side will just regenerate the other
31:32side. There's no suppression there. It
31:34immediately regenerates right next to
31:36that head. There's more, you know, head
31:38tissue. So, it's much more sophisticated
Designing Bioelectric Experimental Methods
31:40than that.
31:40>> So, I remember originally uh watching
31:43like talks by you maybe in like 2017 or
31:46even earlier. The like famous experiment
31:49is like the plener cutting up the
31:50pleneria, right? That's the like kind of
31:52like the aha moments that's easy to
31:54communicate. What confused me
31:55immediately was like, okay, you have
31:57this mass of cells, whether it's a worm
31:58or anything else,
32:00>> how can you change the voltages in the
32:02cells in a specific region or like
32:04basically if you're soaking the worm in
32:06a drug? I mean, how do you control where
32:08the voltages are changing? And the
32:10second question is
32:11>> if you're sensing this with voltage
32:13sensitive dyes, how do you deal with all
32:15the artifacts from the dyes or like
32:17bleaching or these kinds of things? Like
32:18to what degree
32:20>> to what like how lossy is the whole
32:22process of actually trying to make these
32:23changes cuz it seems like a very
32:25complicated system and readout.
32:27>> Yeah. Yeah. Great questions. Okay, let's
32:30let's uh let's talk about the dyes
32:31first. Uh yeah, there there are about a
32:33million controls that you need to do. So
32:35uh for for sure for sure there's
32:37bleaching. uh for sure there are issues
32:39with um uh die availability so
32:41differential die penetration in
32:43different regions. So the way you handle
32:44that is to use raometric dies or now
32:46flim fluoresence lifetime imaging which
32:49are basically uh ratios away some of
32:52those uh some of those issues. There are
32:54still plenty the the whole the whole
32:56technology of reading voltage
32:59non-invasively especially in deep
33:00tissues where the light path isn't you
33:03know that's that's there's a lot to to
33:05be done in the future you know um
33:07there's there's a lot of room for
33:08development but but the current to even
33:10then the tools were good enough and the
33:12current tools are good enough to make a
33:13lot of progress but there's plenty of
33:14room for development out there and there
33:16are lots of controls that that you need
33:18to do for sure with the uh with the with
33:21the biomectric changes. So there's a
33:23couple of things
33:24>> I guess wait on the dyes just if we take
33:26like a toy example or whatever if you
33:28you have the worm you cut it in half and
33:30you want to know so you you soak it in
33:33the dyes and they just diffuse into the
33:35worm and then you have how do you get
33:37the ratio? It's like two different dyes
33:38and you have a
33:39>> you can do it there's a couple of ways
33:40you can do it. Uh and um and by the way
33:43now we also have genetically encoded
33:44voltage reporters. So there are proteins
33:47that that report voltage that you that
33:49you can do with transgenics you know.
33:51Um,
33:51>> so it's like from the embryo level, you
33:53you just put it in and it grows with
33:55those reports
33:56>> or you can knock it in later, you know,
33:57you can transfect or something like
33:58that, right? So, so you have a there's a
34:00wide range of tools now that that you
34:02have. And so, yeah, um, you can collect
34:04you can collect at at two different
34:06wavelengths or you can have two dieseS.
34:08One of my favorite uh methods that we
34:10used to use has two dieseS uh, and and
34:13one die is sensitive to depolarization.
34:15The other die either is nonresponsive or
34:17goes the other way. And so then you can
34:19computation
34:19>> they diffuse together or they're even on
34:21the same molecule.
34:22>> Correct. They can they can be or they
34:23diffuse together. But again oftentimes
34:25they will some of these reagents have a
34:29uh a wavelength at which they are
34:30voltage sensitive and another wavelength
34:32at which they're not voltage sensitive.
34:33And so then you can you can ratio away
34:35things like penetration artifacts.
34:38>> And did you then develop these dyes
34:40yourself or took whatever the um
34:43neuroscientists were already working on?
34:44>> Yeah, we don't develop the dies
34:45ourselves. We're not we're not chemists.
34:47Uh uh we we work with people like Evan
34:49Miller who who um makes makes you an
34:51amazing chemist makes these dies uh or
34:53or the the genetic inc genetically
34:56encoded reporters. Um
34:59>> the thing is uh neuroscience sometimes
35:02sometimes they make dies but the thing
35:04with neuroscience is that they're mostly
35:06interested in very rapid spiking. So
35:09what they want are dyes that have very
35:11rapid onoff kinetics. We want the exact
35:13opposite. We want something that is
35:15going to catch all the slow the slow
35:17stuff because the things that we're
35:18interested in change at at the scale of
35:21minutes hours maybe right not
35:23milliseconds. So a lot of the dies that
35:25we're interested in are not in fact the
35:27dies that most people are using because
35:29they're trying to catch the kilohz kind
35:30of spike right yeah and is the
35:33resolution purely determined by the
35:34microscope resolution or by
35:36>> it is and in fact and in fact now we
35:38have we're looking at the nuclear
35:40envelope potential. So the nuclear
35:41envelope also has a voltage gradient.
35:43We're going to have a cool paper on that
35:44soon. Oh wow. Yeah. Yeah, we didn't
35:46discover that that it's been known for
35:48for a long time through
35:49electrophysiological evidence, but yeah,
35:51the nucleus has a voltage. So yeah, the
35:54resolution is just your microscopy. Um I
35:56will however say that the vast majority
35:58of what we do with this is not at high
36:01magnification.
36:02>> Voltage the the as as now we know which
36:04we didn't know at the beginning. Uh the
36:06bi-electric code is not a cell level
36:09code. So, so yes, cells read their own
36:12voltage, but but the real um magic of
36:14all of this is in large scale patterns.
36:17So, most of the time our problem are is
36:19the opposite. We're not trying to zoom
36:20in and although that's cool, too. You
36:23can zoom in like within a single cell,
36:24you can see different um domains of
36:26voltage in the same cell. Like there are
36:28lots of like cells don't have one
36:29voltage. There's lots of little It's
36:30like a soccer ball of different, you
36:31know, like different um
36:33>> uh I don't know if it's rafts or or what
36:35it is, but um
36:36>> but but for us, the biggest thing is to
36:38pull back and see the large scale
36:40because if you're dealing with a frog
36:41leg or a whole plinarian or or an, you
36:43know, an eye or a frog embryo or
36:45something like that, you're not trying
36:46to zoom in. You're trying to pull back
36:47and say what is the what is a large
36:49scale pattern here. Yeah.
36:50>> Is this already visible on the single
36:51cell level? Like when you have the
36:53single cell stage of an embryo?
36:56>> Absolutely.
36:56>> And I guess how
36:57>> is that just a dipole? Do you just have
36:59plus minus on the single cell level or
37:01what?
37:01>> Yeah, the single. So, so the single cell
37:03egg, there's there's sort of two things
37:05going on. There's inside versus outside,
37:07which is where how you measure the
37:08voltage, right? So, so all around Yeah.
37:10in internal versus external path.
37:12>> But again, even even in at the earliest
37:15stages, it isn't a single number. So, if
37:17you really zoom in on the on the um
37:19membrane, you see there are domains of
37:21different voltages all around.
37:23>> And is that random or what is the
37:25program the pattern?
37:26>> It's a good it's a good question. It's a
37:28good question. We we don't know yet
37:30whether there's some sort of
37:32combinatorial code at the level of a
37:34single cell on the on the membrane. So
37:36we don't know that hasn't been
37:37functionally tested because mainly
37:39because we don't know how to address
37:40individual domains, right? It would be
37:41nice to make different patterns. We
37:42don't know how to do that yet.
37:44>> You know, so can I say it's not random?
37:46No. Do I believe it's random? Not for a
37:48moment. I I don't think any of this
37:49stuff is random. I think I think these
37:51are very powerful um computational
37:53elements and I would be ult just you
37:57know incredibly shocked if evolution
37:58didn't notice that and and wasn't
38:00optimizing all this stuff for various
38:02purposes. So but but I can't prove that
38:04it's not written
38:04>> but it needs to be passed down in some
38:06way right so there it needs to be some
38:08sort of memory on
38:10>> some level that is able to retain the
38:13information and then uh
38:14>> so in the case of okay so so we don't
38:17yet have evidence that bioelect
38:18electrical changes propagate through
38:20sexual reproduction I'm not saying they
38:22don't I can imagine how it might work
38:23but we don't have evidence for that
38:24mostly just because we don't have a good
38:26model system with a short enough life
38:28cycle where we can do this um you know
38:30frogs have a two-year reproductive cycle
38:31it's a it's a pain. So we just we just
38:33haven't done it. But um but the one case
38:36where it does propagate is in pleneria.
38:39So in pleneria which replicate by
38:43fision and regeneration. In that case it
38:45it it does it does the changes do
38:47propagate. So I I don't you know I can't
38:49tell you that biomectric changes that we
38:50make in a tadpole will then affect the
38:52oasite and then affect the next
38:53generation but it's not impossible. We
38:55just don't have evidence for it. And I
38:57guess like when you're actually making
38:59the changes the second half of the so
39:01you have the the dyes and then how do
39:03you actually affect the changes how do
39:05you deal with the fact you know
39:06diffusion or whatever like how do you
39:07actually make changes on a local level
39:10or is it something that's happening for
39:11the whole organism just kind of randomly
39:13and you pick out the ones where the
39:14change is what you're looking for.
39:15>> No no it's yeah it's definitely not
39:17that. Um, okay. So, there are two I'll
39:20tell there are two basic methods and and
39:22I'll I'll tell you one one example of
39:23each one one kind of example story. So,
39:27one thing you can do especially in the
39:28frog embryo which is partly why I
39:30started there is super convenient is
39:32that you can you can microject RNAs
39:36encoding specific channels and pumps and
39:38things like that into precursor cells
39:40that then give rise to various
39:41structures. So if I want so so imagine
39:44so you're looking at the early frog
39:45embryo and you know that in the face the
39:49location of the eyes are determined by a
39:51particular voltage pattern. There's a
39:53particular spot that says this is where
39:54the eye is going to be. So to to be able
39:56to test that the functional role of that
39:58what you want to do is introduce that
39:59pattern somewhere else. And so let's say
40:02uh let's say you want to uh put it on
40:06the on the gut of the embryo let's say.
40:08So what you would do is you would start
40:09with an early embryo. So let's say 16
40:11cells or something like that and you
40:12take your RNA and you micro inject it
40:14into cells using a fate map that you
40:16that is a known published fate map. You
40:18inject it into cells that are going to
40:19give rise to the region that that you
40:21want. And so then you introduce a little
40:23and of course they divide. And so their
40:25offspring all have this channel. And so
40:26you make a little a little patch, right?
40:28And to the extent that you've targeted
40:30what you want to target that's that's
40:31that you know and then and then of
40:32course you check up the voltage to make
40:34sure that that's that that's what you
40:35did. So, so in that case,
40:37>> so from that perspective, the pattern
40:38would be mainly it's like a spot
40:40basically.
40:40>> Well, it can have different so this I'll
40:42get into this momentarily. It gets much
40:44more complex but but the minimal like
40:46the simple basic version is a spot of
40:49voltage of a particular size. That's the
40:50simplest pattern. The pattern is
40:52actually much more complex because the
40:55tissue that the material that you're
40:57dealing with is an excitable medium. So
40:59think of like like almost like a like a
41:01cellular automaton, you know, or or
41:03something like that where you start
41:05>> the neighbors are responding.
41:06>> Yeah. Yeah. And and and and the gap
41:08junction so the voltage channels can be
41:10the the the ion channels can be voltage
41:12sensitive. The gap junctions can be
41:14voltage sensitive. So you have feedback
41:16loops, both positive and negative
41:17feedback loops. And as soon as you've
41:18introduced an inhomogeneity in that
41:21excitable medium, then the thing takes
41:24over and and you start to see, you know,
41:26you start to see all kinds of patterns.
41:27One of the important things that we've
41:29done is to create a uh a simulator, a bi
41:33electricity simulator that shows you
41:34because it's not obvious at all. You
41:36can't at least I I can't do it in my
41:37head to say this is this is what you
41:39know what's going to happen. So so the
41:41patterns start off simple but they get
41:43they get very complex very quickly and
41:44you need the the simulator to uh to to
41:47guide it. So, so the first the first
41:49kind of way you can do it is you can
41:51target whether it's early micro
41:52injection, whether it's later
41:54iontopharesis or some kind of
41:56electroparation. I mean, you can kind of
41:58target things right to where you want
42:00them. That's one. There's actually a
42:01much more interesting I think and and
42:03much deeper way to do this, which is to
42:04take advantage of the uh
42:07self-organization of the system. So, so
42:10I'll give you an example. Uh we and this
42:13is this is the work of VIP pie in my
42:16group. Uh
42:18in uh 2017 basically from 2017 to about
42:22now what we were working on with him is
42:24um birth defects. So specifically birth
42:26defects of the brain face and gut in the
42:29tadpole and one of the things that
42:31happens when you either expose them to
42:32teratogens or uh they have a mutation of
42:36an important gene like notch. They have
42:38they have these terrible defects. And we
42:40looked and we noticed that one of the
42:42things that was happening is the
42:43prepattern that the electrical
42:45prepattern that tells the brain and the
42:46rest of these organs what shape to be
42:48the pre- pattern was all screwed up. And
42:50we said okay could we rescue all of
42:52these things by uh putting the pattern
42:54back to normal despite the fact that it
42:57it had seen these seratogens. It had the
42:58mutation like we ultimately we showed
43:00that you can even um repair after even
43:03though they have the notch mutation you
43:04can still get normal embryoenesis. It's
43:06kind of amazing. Um, so, so how do you
43:08do that? Well, the problem is the
43:09pattern is quite complex. You don't want
43:11to go in and have to tattoo all the
43:12cells to make, you know.
43:13>> Yeah, because how large is this? This
43:15must be rather large embryo if you can
43:18micro.
43:19>> Yeah, the embryo I mean the embryo
43:20itself is maybe a millimeter wide,
43:22something like that. Um, but the cells
43:24are quite small. There are a lot of
43:26cells and there's no hope of going in
43:29and really like, you know, putting in a
43:30cell autonomous pattern, you know, cell
43:32cell by cell. What we wanted to do was
43:34to uh take advantage of the native
43:37dynamics of the of the voltage pattern.
43:39And so we used the simulator. And so so
43:40Alexis Pyac, our collaborator, uh
43:43developed this early version of this
43:45amazing simulator. And um what we what
43:49we did was we built a what she she built
43:53a computational model of what was going
43:54on in these cells and the different
43:56channels, how they were reacting to each
43:57other and the voltage and how they how
43:59the system evolves as a function of
44:00time, right? [snorts] And then we simply
44:03uh ask the model to go backwards and say
44:06okay but if we wanted the pattern to be
44:08this what would we need to do and the
44:10and the and the the the system was able
44:12to identify one particular channel
44:14called HCN2. HCN2 has a really
44:17interesting property. Um
44:19>> in cells that are a little that are a
44:21little bit polarized it it um
44:26cells that are that are deolarized it
44:28leaves them alone. But cells that are a
44:30little bit polarized that it polarizes
44:32them further. So what it in effect is is
44:34a is a contrast filter, right? It it
44:36exacerbates differences. If you're down
44:38here, you stay down there. If you're up
44:39here, you go to here, right?
44:40>> It's polarized relative to what? The
44:42extra extracellular matrix or like
44:43polarized
44:44>> inside and out. So so voltage. So so you
44:46know the way you the way neuroscientists
44:48measure VM. So from from inside relative
44:50like across the memory
44:51>> just whatever there's like a fluid Yeah.
44:53>> around the cells and whatever the
44:54potential is.
44:55>> Exactly. So, so this this HCN2 uh turned
44:59out we predicted the HCN2 uh would be
45:02like a like a sharpen filter on
45:03Photoshop. It would basically be it
45:05would sharpen the gradients and that's
45:07that was very important because what we
45:09saw in the embryo is all the gradients
45:10would get fuzzy. The brain was all
45:12misshaped because the the the the normal
45:14distinction between here's where the
45:15neural tube begins and ends and that
45:16kind of stuff was becoming degraded.
45:18That information was becoming degraded
45:20and fuzzy and we wanted to sort of
45:21strengthen that. So knowing that we
45:25didn't have to localize it. We could
45:27just soak the whole embryo like applying
45:30the same filter to to to everything. Uh
45:33I was I was shocked. It it worked. Um uh
45:37it it worked amazingly well. We were
45:39able to repair uh brains after all kinds
45:42of really nasty, you know, kind of
45:44insults. Uh normal brain structure,
45:46normal brain gene expression, normal
45:48IQs. they got their learning to nor to
45:50to standard levels after very severe um
45:52you know kinds of defects. So that's an
45:55example of leveraging an understanding
45:59of the native uh uh trajectory of the
46:01system where you don't try to
46:02micromanage every piece but you know
46:04that you you can you can compute that
46:05that if I give this kind of stimulus and
46:07that kind of stimulus then the system
46:09itself will enter specific states right
46:11that that you can count on. And the most
46:13important part of all of this I think is
46:16that bioelect electricity offers
46:18something very unique that uh is really
46:20hard to do with with for example
46:22chemical signals. Um, and and I'll give
46:24you an example of of what I mean when
46:25we're talking right now. I don't need to
46:28worry about the synaptic proteins in
46:29your brain. Um, right, you're going to
46:31handle all of that. We have a we have a
46:33very high level interface and and all of
46:35the downstream stuff is handled on my
46:37end and on and on your end. It's why
46:38humans were able to train dogs and
46:40horses for thousands of years knowing
46:41zero neuroscience. like they had no idea
46:43what was between their ears and it
46:44doesn't matter because because the
46:46amazing thing about the our body
46:47architectures is that they uh transduce
46:50these very um sort of high level
46:52abstract things like think about um when
46:55you wake up in the morning and you have
46:57social goals, research goals, financial
46:59goals, whatever. In order for you to get
47:00up and do those things, ions have to
47:02cross muscle membranes like these
47:03incredibly abstract highle things have
47:05to make the chem have to change the
47:06chemistry. So and and and and because
47:09bio electricity that that that trick was
47:12developed long before there's nerve and
47:14muscle, bi electricity is is all about
47:15that. It meant that when we say to the
47:18cells build an eye, we don't have to say
47:21how do you build an eye? I I we don't
47:23have any idea how to build an eye. We
47:24you know there's tens of thousands of
47:25genes that that would have to be
47:26changed. There are stem cells have to go
47:28here and there and the the retina is
47:29very complex. We don't have to know any
47:31of that. What we found was a set of um
47:34highle cues just like we communicate
47:36here. We are communicating to the
47:38cellular collective and we talk about
47:40very abstract highle things. Eyes.
47:42Individual cells don't know what an eye
47:44is but the but the group does
47:45apparently. And so so bio electricity
47:47just like in neuroscience bio
47:48electricity allows us to communicate
47:50with the system at a high level. This is
47:52very different from the standard
47:53molecular biology approach where you try
47:55to uh you try to micromanage the the the
47:58you know bottom up. You try to
47:59micromanage the heart.
47:59>> Yeah. It sounds like you're just
48:00initiating a sequence that's already
48:02known somehow.
48:03>> We're initiating the start of a
48:05conversation. Um, it really I really
48:07think that the right uh the right
48:08formalism for all of this is is
48:10communication and and and and it's a
48:12it's a conversation. We make we make the
48:14first uh we we put out the first
48:16stimulus a prompt knowing that the
48:18system is going to do certain things.
48:19Maybe at some point we have to course
48:21correct and say something else. Maybe we
48:22don't. In the case of the frog leg
48:24regeneration,
48:25>> we made a stimulus in the first 24
48:27hours. They gave us a year and a half of
48:28leg growth. We never had to touch it
48:30again. We never touched it. So in some
48:32cases you say one thing and the system
48:33goes and that's the the characteristic
48:36of competent systems is that you you
48:38don't have to micromanage them. You give
48:39them their marching orders. If you're
48:40convincing they will go off. There's
48:42autonomy in the material, right? You're
48:44dealing you're dealing with an aential
48:46material here. This is not even active
48:47matter or computational matter. This is
48:49agential. These are agential materials.
48:51And in the case when you were um
48:53stimulating tissue to grow eyes, would
48:56they always fully form a fully formed
48:59eye in in the sense that there would be
49:01a retina? Was it functional all all the
49:04time?
49:04>> Good good question. Uh not all the time
49:06and there are two reasons for that. Uh
49:08so so so yeah, you know, definitely not
49:10100% um success rate. There are two
49:12reasons for that. One one is a boring
49:15technical reason which is just that it's
49:17there's there are technical challenges
49:19in in getting the voltage pattern the
49:20way we want and we've been trying to
49:22develop since then optogenetic um
49:24strategies so you can lay down light
49:25light masks on on a tissue and like all
49:28of that is still is still difficult like
49:30it's not it's not easy but there's a
49:32there's a deeper and more interesting
49:34thing going on here. One time we we had
49:37these we had these embryos that and that
49:40encoded a uh they were transgenic and
49:43they had a gene that was driving ricks
49:45one which was it's an early eye field
49:47specification gene and it was driving a
49:50fluorescent protein. So you could see in
49:52the embryo you could see by fluoresence
49:53ahead of time which cells were going to
49:55become eyes. Okay. So non-invasively. So
49:58that's cool. We got I forget who who we
49:59got maybe Mike Zuber or somebody. I
50:01forget who we got the the the embryos
50:03from. Anyway, so so we do our biomectric
50:06experiment and I look at the embryos and
50:08I see this thing. This thing has like
50:10seven ectopic eye spots all over all
50:12over because I I sort of poked it in
50:14different locations. I'm like, "Oh, this
50:15is amazing. This thing have seven eyes,
50:16right?" Like incredible.
50:17>> And so you do that actually by hand or
50:19do you use
50:20>> No, by hand. You do it by hand. Yeah.
50:21You sit there. There's a micro injector
50:22with a little glass needle and if you
50:24break the needle, you got to go through
50:25like recalibrate the whole thing. And
50:27then you sit there and you just like
50:28poke the poke the early embryo, right?
50:30And I always, you know, I always wanted
50:31to make an embryo with tons of eyes. And
50:32so, so [laughter] I thought I thought
50:34this was this would be fantastic. I'm
50:35just gonna I'm just going to inject like
50:36lots of lots of places. So I look at the
50:38embryo on Monday and I see seven seven
50:41like ectopic Ricks one spots. I'm like,
50:43"This is amazing. This thing's going to
50:44be great." I come back the next day,
50:46there's only four. I said, "Well, that's
50:47weird." I come back the next day and
50:49you're lucky if there's one. And what's
50:50happening at that later as we started
50:53digging into it and later this is what
50:54we found out. There's a there's a debate
50:57going on in the tissue because you
51:00introduce some cells that not only this
51:02is this is I missed one one important
51:04part of this which is that these eyes
51:06that we make when you when you take a
51:07cross-section so let's say let's say I
51:09inject a potassium channel and I also I
51:12mix in some betalactoidase RNA so that
51:14you can track later you can just stain
51:16them and see which cells it just turns
51:17blue in the cells that you injected so
51:19you can see which ex which cells exactly
51:21did I inject when you when you section
51:23these eyes only a small percentage of
51:25them are injected which means that the
51:28cells that we injected actually then
51:30went out and recruited other cells that
51:32we never touched to be part of this eye.
51:33It's lots of collective intelligences do
51:35that. Ants and termites do that too. If
51:37a couple of ants find something too
51:38large, they will sort of recruit their
51:40nestmates, right? So the the the
51:41material scales to the problem, right?
51:43Again, amazing. We didn't have to teach
51:44it to do that. It it already does that,
51:45right? So, so okay. So, so we knew that
51:48that when you change the voltage and
51:49this is this is the part of um uh that's
51:52critical for biio medicine is because
51:53you want to be really convincing when
51:55you have this conversation with the
51:56cells. You want to make sure that they
51:57have bought into the new homeostatic set
51:59point that you've given them. They're
52:01not going to fight you on it the way
52:02that now currently happens with drugs. I
52:03mean all cells resist and whatever you
52:05want you want them to buy you won't buy
52:06in from the system.
52:07>> So we say okay when we do this
52:08successfully these cells uh recruit
52:10their recruit their neighbors. But what
52:13ends up happening is a battle because so
52:15I'm over here a cell with an aberant
52:17with a with an aberant voltage and I say
52:18or a group of cells and I say to my
52:20neighbors hey you guys should be an I
52:22with me you should have this voltage
52:23like me and the way that actually
52:25happens is through the gap junctions and
52:26things like that right so saying you
52:27should be an I but there's an ancient
52:29cancer suppression mechanism which
52:31basically says if your neighbor has like
52:33a weird voltage you should normalize
52:35them out and and and that happens also
52:37through the gap junction so the
52:38surrounding cells like no you should be
52:40skin like me or gut or whatever and
52:42they're like, "Nope, you shouldn't be an
52:43eye like me." And there's a there's a
52:44battle that goes on of the of the
52:46voltage and probably other things. And
52:48eventually the system settles down into
52:50one fate or the other. So So what
52:53happens with a lot of these eye spots is
52:54they just don't make it because the
52:55neighbors wipe them out. Now they don't
52:57kill the cells are still there, but the
52:59but the but the the decision of what are
53:01we going to actually be? uh yeah that
53:04decision uh you know we we are still we
53:07are still at the early stages of knowing
53:10what it is that makes specific patterns
53:12compelling to these cells. You know
53:13sometimes we can do it uh and other
53:15times and other times it doesn't work
53:17and we're still working that out.
53:18>> And earlier on you were mentioning that
53:20you had like a tool like a um sharpness
53:22filter in this situation. Do you think
53:25that higher contrast gets more likely to
53:29be rejected or um like can you make it
53:31more probable by having gentler changes?
53:35>> That's a that's a great hypothesis. Uh
53:37we are characterizing all of that. We're
53:39trying to you know we're trying to
53:40figure it out. Um [gasps]
53:42part of it is the part of I mean one
53:44thing we noticed is that gradients are
53:48what the cells interpret. So it's not
53:50the absolute voltage that matters.
53:52Originally, we had a very simple
53:53hypothesis that maybe maybe it's maybe
53:55absolute voltages are just a code for
53:57different body organs or something like
53:58that. It's not um they're not watching
54:00uh absolute voltages. They're watching
54:02deltas differences. And so that means
54:04that all the interesting things happen
54:06at borders. So when the one one voltage
54:08domain is next to another one and the
54:10shape of them and the and the gradients.
54:11So yeah, it's probably something like
54:14that. It's probably some kind of tuning
54:15of like exactly how
54:17>> you have a more adabatic uh change where
54:20it's more likely to to follow the lead
54:23or something like that.
54:23>> Entirely possible. Entirely possible. Um
54:26there are also a lot of uh symmetry um
54:29there breaks and self- amplifications so
54:31that even if you start off with a nice
54:33gentle slope they will crank it up. You
54:35know something will go up and down.
54:36There are a lot of like bifurcation
54:38points and things like that. So in this
54:40example of eyes, you basically made the
54:42observation that certain cells would
54:44become eyes. But um where's that
54:47information stored for the whole program
54:51that you start the conversation with?
54:54>> Um there are two there are two uh
54:57answers to that question on two at two
54:59different levels. F first of all uh what
55:02we are studying is what I think we're
55:04studying is the bielectric code which
55:07specifically is the question of how
55:11surrounding tissue interprets a
55:13particular voltage pattern. It's a very
55:14interesting kind of computation where
55:16the information is simultaneously
55:18rewiring the computer, right? Because
55:19it's the same tissue that has to process
55:21that information, but by processing that
55:23information, uh it changes your your
55:26com, you know, what you do next, right?
55:27So, it's a self sort of selfmodifying
55:29computer. Um from from that from that
55:32perspective we we need to understand and
55:34it's a kind of a combined um bioysics
55:39you know cell biology question of how do
55:42different kinds of cells interpret
55:43specific domain specific biological
55:45patterns for example how it's going to
55:47work across species is it the same
55:48pattern that's an eye of a frog versus
55:50an eye of a fly versus and and things
55:52like that. Um the second question or the
55:55second uh way to think about it and I
55:57don't know if you want to get into this
55:59but but the bigger question of where do
56:01pattern where do these patterns come
56:03from in the first place that's a that's
56:05a very deep um question and uh we could
56:08talk about it if you want but um it's uh
56:11I've been I've been this is last year 25
56:13was the first year that I've been
56:14talking about that that question because
56:16I think it's finally um become
56:18experimentally actionable. up until then
56:20it was, you know, kind of a
56:21philosophical question. Uh, but but I
56:24think now we can we can get at it and
56:25and I I have a very weird theory about
56:27that that is pretty incompatible with
56:29the way that um I think most most
56:30biologists think about things. But um
56:32yeah, I don't know. I don't know. As a
56:33physicist, I don't know what you'd think
56:34about it. So, uh so obviously the this
Different Model Organisms
56:38begs the question like, okay, can we do
56:39this in humans and things like that? But
56:41if you were going to do another more
56:43like a curiosity hero experiment with a
56:46different animal or a different system,
56:48do you have like a wishlist system kind
56:50of like Pleneria where something strange
56:52can happen potentially that you just
56:53like haven't you're you haven't made it
56:55there because you're busy with other
56:56things like uh
56:57>> what a great question. Uh okay. Uh we
57:00are we're working in mice now um with
57:02more there's a company that spun out of
57:04our lab called Morphaceuticals and we've
57:06been interested to uh do the limb
57:08regeneration thing in mammals. Um, so,
57:11so we've got we've got some experiments
57:12in mice going. Uh, there are, you know,
57:15there's a few things. Uh, plants, uh,
57:17I'm interested in plants. We haven't
57:18done any plant work yet. We will, um,
57:20plants have a have, one thing that
57:23plants can teach us, for example, is
57:24that their target morphology is done at
57:27a different scale than ours. So, for
57:28example,
57:30you know, normal animals, they have a
57:33not not all, but most normal animals
57:34have a have a large scale target
57:36morphology that's the same for each
57:37species. If you look at a tree, the
57:40individual pattern of the branches and
57:42and so on is not the same, but in but
57:45but but at a smaller scale it is. So the
57:47leaves, the seeds, the the
57:48cross-sections, all that, right? So
57:49they're holding their target morphology
57:51at a slightly different level. I think
57:52that's that's incredibly interesting.
57:54And plants in general have many
57:55interesting things. Um so that's so
57:57that's one thing. Uh there are some, you
58:00know, for example, uh in terms of the
58:02aging thing because we have a lot of
58:03aging work in our lab. So things like
58:05naked mole rats, you know, what what
58:06does the biomectrics of naked mole rats
58:08look like, you know, uh other other
58:10species that that either live a long
58:12time or really regenerate. We've done
58:14some work in axelottle. It's not nearly
58:15enough. There needs to be way more way
58:17more than that. Yeah, there there are
58:19lots of cool um animals out there.
58:21>> What's the main difficulty in mice?
58:22Because they don't naturally regenerate.
58:24So for plenarian it's kind of easier to
58:27understand that since they already
58:29regenerate you can maybe program a
58:31second head but then for mice it's not
58:34typically that you cut off a paw and
58:36they would regrow it. What what's
58:38different there? What do you have to
58:40modify to get something out of it?
58:43>> I I I have a I have a different
58:45perspective on this than than I think
58:48standard in the in the field. I don't
58:50think that mammals are less plastic. I
58:52don't think that's what it is. I think I
58:54think it's a I think it's an engineering
58:56problem. I mean, think about think about
58:58our um mamalian ancestors. So, you've
59:01got this little thing. It's, you know,
59:02kind of mouselike running around the
59:03forest. Some somebody bites its leg off.
59:06>> You don't have time to try to
59:09regenerate. You're going to bleed out.
59:10You're going to get infected. You're
59:11going to try to crawl its load bearing.
59:13So, you're going to try to put weight on
59:14it and rub it into the forest floor. Uh
59:16the best thing you can do at that point
59:17is scar and and have inflammation and
59:20hope that you live. That's not the case
59:22for axelottals or or plenario, right?
59:25Most good regenerators are aquatic. Um
59:28it's not that mammals can't do it. Look
59:29at deer. So deer every year they
59:31regenerate um
59:33>> they they grow a centimeter and a half
59:35per day of new bone. A centimeter and a
59:38half of new bone per day. Bone vascule
59:40intervation, right?
59:42>> So it's not that they can't do it. And
59:43uh there's something else that's
59:45interesting. I don't know if if you guys
59:46have seen our work on anthrobots, but um
59:50when you isolate cells, adult cells from
59:53an elderly patient and it's impossible
59:55for them to make a human, they make
59:57something else and they make anthrobots
59:59that have 9,000 differentially expressed
1:00:01genes, half the genome, and they, you
1:00:03know, they do cool things like healing
1:00:04neural wounds and all this stuff. the
1:00:06plasticity is there, but I think there
1:00:09are um constraints that have been uh and
1:00:12um uh uh trade-offs that have been
1:00:14evolutionarily molded. And so one of the
1:00:17strategies that that we're doing, for
1:00:18example, we've developed this thing
1:00:19called a biodome, it's a wearable
1:00:21bioreactor.
1:00:22>> So when you when you have an amputation
1:00:24as a mouse
1:00:25>> and you're facing dry air, so the
1:00:27currents aren't going to flow, right?
1:00:29>> And and and you know that this thing is
1:00:31going to be exposed to the elements,
1:00:33right? There's no point in putting
1:00:34energy. How do lizards do it? I lizards
1:00:36are kind of the in between between like
1:00:37aquatic and and
1:00:38>> they don't regenerate their limbs.
1:00:40Lizards regenerate tails. Um yes. And
1:00:42and I do think that's that's
1:00:43interesting. Deer also not aquatic, but
1:00:46um interesting about deer that it's not
1:00:49loadbearing. They don't have to put
1:00:50pressure on it, you know. So I really
1:00:51think
1:00:52>> maybe the tail is kind of in the same
1:00:53>> maybe you're just sort of dragging it
1:00:55along, right? Uh
1:00:56>> it was so this biodome. So the idea is
1:00:58is is a few things. Uh aquous. So it has
1:01:01a gel that provides an aquous
1:01:03environment so that you can drive the
1:01:04currents, the injury currents and all of
1:01:06that,
1:01:06>> but also protective
1:01:08>> and and there's something really
1:01:09interesting we learned in from the frog.
1:01:11So So we did adult frogs. The adult
1:01:12frogs also don't grow their their legs,
1:01:14but we got them to grow their legs with
1:01:16the biodomes.
1:01:17>> One interesting thing we found is that
1:01:19even an empty biodome with no drug
1:01:21payload did induce some degree of
1:01:25regeneration. And so you say, why is
1:01:26that? The frog's already swimming in
1:01:27water. what's what's what was what what
1:01:29you know what what use is the is an
1:01:30empty biodome
1:01:32>> I think what's going on here
1:01:33>> is and and I don't know this but this is
1:01:35a hypothesis that I have that if you're
1:01:38a cell uh at the wound facing an
1:01:40infinite bath basically you release a
1:01:43bunch of chemicals
1:01:45[clears throat] they float off and as
1:01:47far as you know your influence on the
1:01:49micro environment has been zero it's
1:01:51you've been completely ineffective and
1:01:53so what's the point whereas in a biodome
1:01:56you have a protected micro environment
1:01:57where the the signals the the paracrine
1:02:00and the autocrine signals that are
1:02:01coming out uh they're accumulating and
1:02:04so you know as a cell you know that you
1:02:06have control over what's going on right
1:02:08>> you can expand your border kind of
1:02:10>> yeah yeah I I my that's my suspicion is
1:02:12that is that that's the other thing the
1:02:13biodome does is provide a um uh a
1:02:16controlled micro environment where the
1:02:18system itself has some some uh some
1:02:19power
1:02:20>> so like a continuously growing bioddome
1:02:22could be interesting where you start off
1:02:24with a very low volume where your
1:02:26relative signal is larger and then you
1:02:29grow the biodiversity it could be like a
1:02:31balloon I mean it could just like a
1:02:32balloon absolutely yeah see this is all
1:02:34the kind of stuff we talk about you know
1:02:35in the as an engineer so this is what I
1:02:37mean by an engineering problem like
1:02:39>> it is I don't think it's that it can't I
1:02:40think it's that it's decided not to and
1:02:42that if you provide the right stimula so
1:02:44so you need the the the delivery
1:02:46technology you need the the uh the
1:02:48environment and then you need the the
1:02:50the payload that be that's the initial
1:02:52signal that tells you like get going
1:02:54>> but I guess like maybe a less ambitious
1:02:57An easier thing would be to like get a
1:02:58deer to grow an antler in a different
1:03:00part of its body or something.
1:03:01>> Yeah. I Yes. I I've I've uh I've
1:03:05suggested the deer model system to
1:03:06people. Nobody's [laughter] taking me up
1:03:08on it. I I I'll tell you a I'll tell you
1:03:10a funny story. Uh this is the kind of
1:03:11thing. It's so sad in that in science
1:03:13like such things are almost impossible.
1:03:15There was a a a team of um a father and
1:03:18son. Bubenic was their last name. They
1:03:21lived in Canada. They had a herd of deer
1:03:23and they did an experiment that was
1:03:26probably I think 35 years and they
1:03:29discovered something incredible. They
1:03:30discovered trophic memory. So trophic
1:03:32memory basically they discovered what
1:03:34what my plenarian two-headed thing in
1:03:37mammals. What what they found was that
1:03:39if you take a deer and uh uh you take a
1:03:42you take a knife and you etch one
1:03:43particular location on the branch
1:03:45structure, it makes a little callous.
1:03:47The bone heals that year, the whole
1:03:49thing falls off. So it's gone. Next
1:03:52year, new antler rack comes up. They
1:03:54have an ectopic branch at the location
1:03:56where you made the damage. Amazing,
1:03:57right? Amazing. Uh and then that goes on
1:04:00for five or six years. Then it goes
1:04:01away. And so imagine that's like a
1:04:03single experiment is is at least 10
1:04:04years because you have to document
1:04:06before. So several years before here's
1:04:07the pattern. It's consistent. Then
1:04:09here's my my cut. Then here's repairs.
1:04:11And
1:04:12>> so I was the only person writing about
1:04:14this. So I found this work. It was
1:04:16described in the 60s uh for the first
1:04:18time in a book. Uh I was the only one
1:04:19writing about this because I said and
1:04:22this is I I use this example with with
1:04:25when I when I talk to when I lecture to
1:04:26to students like developmental biology
1:04:28students. I give a talk called things
1:04:29that are not in your textbook. What's
1:04:31not in your textbook and why is it not
1:04:32in your textbook? And I give this
1:04:33example. I say okay here's the biology.
1:04:36What does your solution to this problem
1:04:39look like? Never mind what the solution
1:04:40is. What does it look like? It's is it a
1:04:42molecular um pathway? You're going to
1:04:44draw me a c like a diagram of genes
1:04:46interacting with each other. Wh how you
1:04:48how is this gonna f first of all first
1:04:50of all it has to remember where in the
1:04:52branch structure the damage was then the
1:04:54whole thing falls off anyway so you
1:04:55can't store it locally it has to be
1:04:57where in in the scalp somewhere else in
1:04:59the rest of the body that has to be
1:05:00imprinted onto the new bone cells so
1:05:02that okay when you you know 2
1:05:04centimeters forward when you get there
1:05:05take a right like an extra branch we
1:05:07don't the standard tools that we have
1:05:09for explaining um outcomes in
1:05:11morphagenesis are not amendable to this
1:05:13we don't have the right tools yet
1:05:15>> so I was writing about this stuff and uh
1:05:18and I got a letter from Bubenic and he
1:05:20said uh I have 35 years worth of these
1:05:24antlers in my garage and I need to get
1:05:27rid of them. Do you want the antlers? I
1:05:28said I sure as hell do absolutely. This
1:05:31is like a unique uh scientific object.
1:05:33There's nothing else like this. There
1:05:34will never be anything else like this. I
1:05:36said absolutely I do. And he sent me um
1:05:3813 boxes 13 big boxes of antlers. Every
1:05:41handler meticulously labeled the name of
1:05:43the deer. Here's here's Lenny 1987, you
1:05:45know, 1986 54. And you can see we had
1:05:47them um cats scanned at the vet school.
1:05:49We sent it to the vet school in Grafton.
1:05:50We had them cat scan everything and uh
1:05:52to to you know to show what it was. No,
1:05:54no one's ever going to be able to do
1:05:55this again. You're never going to get
1:05:57money. You don't have time to you
1:05:58[laughter] know to do this kind of
1:05:59stuff. But but in pleneria but but you
1:06:01know I was I was able to tell him that
1:06:03that well at least we got a tractable
1:06:04version of this. I would love to work
1:06:06with deer. I just don't see I I don't
1:06:07see how we're
1:06:08>> What about human hair? I feel like human
1:06:10hair is kind of in the same direction as
1:06:12antlers, right? Like I think regrowing
1:06:15human hair is like a big business, you
1:06:17know. [laughter]
1:06:17>> Yeah, I get Yes, I I know where you're
1:06:20where you're coming from. Um I get
1:06:23emails all day every day about uh drop
1:06:26everything you're doing and work on
1:06:27this. Hair is definitely up there. Some
1:06:29other things.
1:06:30>> Teeth, although teeth I think somebody's
1:06:32already cracked teeth if I understand
1:06:33correctly. Yeah, there's a Japanese
1:06:35group that did it. Yeah, I think I think
1:06:37teeth will work. Um, people have all
1:06:39kinds of suggestions, some of which I'm
1:06:40not gonna um repeat in here,
1:06:42>> but if I was going to rub something on
1:06:44my head to change the polar [laughter]
1:06:47the polarity of the cells, like the the
1:06:49bias of the cells to try to get more
1:06:51hair to grow out, like is there is there
1:06:52like a simple experiment like okay,
1:06:54what's the what's the bioelectric
1:06:56pattern on the head where there is hair
1:06:58versus like a bald spot and then just
1:07:00see what happens?
1:07:01>> I mean, you you know minoxidil, right?
1:07:03Minoxidil is a potassium channel drug.
1:07:05Oh, it does. I mean, for all I know, I I
1:07:07don't know that there's a biological
1:07:08story about hair. I actually don't know.
1:07:10Um,
1:07:11>> but but it isn't it suspicious that that
1:07:15the hair drug that's out there is in
1:07:16fact an ion channel drug.
1:07:18>> Okay, that's interesting. [laughter]
1:07:18>> Right. That is interesting. So, yeah. I
1:07:20mean, we you're right. We're not focused
1:07:22on on hair. We've got a bunch of other
1:07:24stuff because I I just feel like enough
1:07:26like that's that's a target that
1:07:28everybody sees because of the the
1:07:30commercial implications. So, we were
1:07:32focused on other things. But yeah, maybe
TAME Theory
1:07:34>> I I wanted to get a chance just to
1:07:35quickly discuss uh I don't know if this
1:07:37is all the same kind of uh topic in your
1:07:39head. But the tame theory and these like
1:07:42platonic world of stable states.
1:07:44>> That's what I was that's what I was
1:07:45getting at
1:07:46>> like how do you think about it to have
1:07:47this like idea of because otherwise if
1:07:49it's like
1:07:50>> if it's kind of yay you get these states
1:07:53that are stable but maybe they're
1:07:54infinite, right? and and they're kind of
1:07:56unrelated to each other across species
1:07:57or is it is the idea that there's
1:07:59relatively few stable ones and maybe
1:08:01different species find the same stable
1:08:03state or like what how do you think
1:08:05about this?
1:08:06>> Yeah. Um
1:08:08[laughter]
1:08:09I'm sorry you guys are free I'm sorry
1:08:11you're freezing. Um okay. Uh what you
1:08:15just said is reasonable and I think
1:08:17mostly true and that's I think that's
1:08:19how most people think about it. Um, I'm
1:08:23I my my my idea is more weird and
1:08:26radical than that. I mean, I think I I
1:08:28think what what you're saying is true in
1:08:30that and this is this is how you know
1:08:32over the years I've been able to like
1:08:33say progressively sort of more out there
1:08:35things as as the data catch up. Um
1:08:39the it is it is true I think that the
1:08:41tissue is deeply reprogrammable. In
1:08:43other words, the genetics sets the
1:08:45hardware. It tells you what are the
1:08:47protein that you know the channels and
1:08:48everything else that's going to be
1:08:49there. But we already know that certain
1:08:51kinds of hardware and bi biology
1:08:53provides amazingly um flexible and
1:08:55reprogrammable um hardware uh can be
1:08:57host to all kinds of patterns. One head,
1:08:59two head, you know, and all kinds of
1:09:00weird things.
1:09:01>> Cancer.
1:09:02>> Sure. Yeah. So there so there's there's
1:09:04a lot of there's a lot of information
1:09:05that's processed and generated at the
1:09:07physiological level and it can be
1:09:09different um exactly the same set of
1:09:11cells can hold multiple different
1:09:12patterns and so on. So so that's so
1:09:14that's all true. I I'm I'm saying
1:09:16something something much more um
1:09:18disruptive than that. Here's here's how
1:09:21there's a couple of ways to to argue
1:09:23into it. Here's here's how I I one way I
1:09:25can start. Um the standard way consider
1:09:28consider uh how we explain the
1:09:32properties of bio of of certain organ of
1:09:34of organisms. So I show you an organism
1:09:36and I say why does this thing look the
1:09:38way it looks and um and and have the
1:09:40capabilities that it does and the
1:09:41properties that it does. The standard
1:09:43modern answer is well selection of
1:09:46course it faced a series of environments
1:09:47over the years. Um everything that
1:09:49didn't look and act like this died out
1:09:50and this is what we have left to
1:09:52selection forces have shaped this thing.
1:09:54I say okay and uh when did we pay the
1:09:57computational cost of designing
1:10:00something that is so competent in its
1:10:01environment? Well over the eons of of of
1:10:04evolution of course by by this genome
1:10:06bashing against the environment. That's
1:10:07the that's that's how you pay the
1:10:08computational cost there. Okay. Very
1:10:10good. Now, now we have um zenobots and
1:10:13anthrobots and we remove them or we have
1:10:17we made tadpoles with eyes on their
1:10:18butts or on their tails and they can see
1:10:21you. You make these things. There is no
1:10:23there is no rounds of selection or
1:10:25adaptation right out of the box. Zero
1:10:27shot, you know, learning kind of thing
1:10:29out of the box. They have novel shapes,
1:10:32novel physiological traits, novel
1:10:34transcripttos, novel behaviors, novel
1:10:36competencies like kinematic
1:10:37self-replication, all this stuff.
1:10:38There's never [snorts] been any
1:10:39xenobots. There's never been any
1:10:40anthropods. There's never been selection
1:10:42for this stuff. Where do these things
1:10:44come from? First of all, and more pre
1:10:46more more precisely, like that's a
1:10:47generic question, but a more precise
1:10:48scientific question is when did you pay
1:10:50the computational cost to to to to have
1:10:53these very specific new properties?
1:10:55>> Um, so what people usually say at that
1:10:58point is, well, it's emergent. They say,
1:11:01well, what does that mean? Because
1:11:02emergence to me emerges just means
1:11:04surprise. It just means really it just
1:11:05means you didn't see it coming for
1:11:07whatever reason. Uh, so what does that
1:11:09mean? and they say, "Well, these are
1:11:10just um uh you know, at the time that
1:11:13you were selecting for humans and frogs,
1:11:15you also got this."
1:11:16>> Mhm.
1:11:17>> So, there's two problems with that. The
1:11:19first problem is that it's all well and
1:11:21good to say after the fact that, well, I
1:11:23guess that's what you got, but that's
1:11:25not what we want. We want to be able to
1:11:26predict and control these things, right?
1:11:28>> It's like what physicists do when we use
1:11:29the anthropic principle. It's like it's
1:11:31there because it's there. [laughter]
1:11:33Well, and that's we should that's
1:11:34something else we can talk about because
1:11:36actually we have we have some data
1:11:38coming out that um I think there's a
1:11:39there's an anthropic principle for the
1:11:41platonic space as well that's pretty
1:11:42wild. Um but but the the but the other
1:11:46issue is that it basically breaks the
1:11:48whole point of evolutionary theory
1:11:50because the whole point of evolutionary
1:11:52theory is to say that there is a tight
1:11:53specificity there's a correspondence
1:11:55between the way you are now and the set
1:11:58of environments that led to you being
1:12:00here. If you can tell me that, yeah, all
1:12:02the selection forces led to to a human.
1:12:04Oh, and by the way, also at the same
1:12:06time, for some reason, anthropos that
1:12:08have nothing to do with it, I'm say,
1:12:09well, you've you've ripped up the
1:12:10specificity of this. Then you you could
1:12:12have gotten anything. And and
1:12:13>> well, could it just be that you're just
1:12:14to play devil's advocate, like you're
1:12:16just activating sub routines. So, for
1:12:18example, like if you take apart a
1:12:19computer, you can get like an LED to
1:12:21blink, you know, on some board. Uh, and
1:12:23it's like it if it was an evolved
1:12:25system, like you know that LED does
1:12:27something else, but then like if you
1:12:28take a component out, you can get some
1:12:30behavior that's interesting.
1:12:32>> So, so getting some behavior that's
1:12:34interesting is kind of nonfalsifiable.
1:12:36You can always get behavior that's
1:12:38interesting, but when you get kinematic
1:12:40self-replication, there's never been, to
1:12:42our knowledge, there's never been an
1:12:44ancestor that that that did kinematic
1:12:46self-replication. There is no other
1:12:47animal on Earth that does it that way.
1:12:49uh there's never been selection forces
1:12:51to be able to do it. We h we need as
1:12:54scientists, we need a theory of where
1:12:56specific competencies come from and and
1:12:58how do they get there and standard
1:13:00evolution does not does not give you
1:13:02that.
1:13:02>> Um so that's that's one way to start
1:13:04thinking about this question of
1:13:07where where what is the what is the
1:13:09latent space of possible patterns that
1:13:11appear when you provide certain
1:13:13interfaces. I I see embryos, robots,
1:13:17computational media,
1:13:19all of it as different interfaces to a
1:13:22latent space of specific patterns. Some
1:13:24of those patterns you can tell an
1:13:25evolutionary story about. Some of these
1:13:27patterns do you can't tell an
1:13:29evolutionary story about, but you need
1:13:30to understand the structure of that
1:13:32space. What what uh you know what what
1:13:34is what are the poss what are the
1:13:35contents of that space? And so that so
1:13:38far so I think pretty tame what I've
1:13:41just said like that's not a big deal but
1:13:44uh but I will but I'll make one other uh
1:13:46uh modification to that and then I could
1:13:48tell you about some some work that we've
1:13:49done on this the standard I mean there
1:13:52are plenty of uh mathematicians who have
1:13:55a a platonist view which they say look
1:13:57there are facts that are simply not
1:13:59facts of physics the facts that the the
1:14:01the fact that quitterians don't act the
1:14:04same way as octanians don't act the same
1:14:05way as as the complex numbers. You don't
1:14:08you you you don't get that from physics.
1:14:09You can't fire the math department and
1:14:11hope the physicists will figure it out.
1:14:13You can't change those facts by changing
1:14:15the fundamental constants of the
1:14:16universe. They're just there's a set of
1:14:18facts that are not facts of physics and
1:14:20those facts are not random. They come
1:14:21from a structured um ordered space which
1:14:24we can investigate and study and and
1:14:26okay so there's some mathemat
1:14:28>> but but the standard assumption there is
1:14:30that those forms are only of relevance
1:14:32to mathematicians. In other words, they
1:14:35what what do what if you ask them if you
1:14:37ask people who are plaintists, what does
1:14:39the Platonic space contain? They will
1:14:40say, well, it contains mathematical
1:14:41truths.
1:14:42>> So my my
1:14:44>> Well, there's there's definitely some
1:14:45topological things that affect biology.
1:14:48Like I mean every almost everybody is a
1:14:50tube. Like I'm like a worm with hands
1:14:52that are putting putting things into the
1:14:54mouth. Sure.
1:14:55>> So like and it's a tube because it's
1:14:57space is threedimensional and you want
1:14:58to have an inside and outside and like
1:15:00some you know surface area.
1:15:01>> For sure. For for sure. And for sure and
1:15:04those things, you know, I stay away from
1:15:06those kind of examples and things like
1:15:07pi and so on because they sound very
1:15:10spatial and then people say, "Ah, well,
1:15:12but spacetime, you know, if it wasn't
1:15:14three-dimensional, then this and that
1:15:15would happen." So I I so I stay away
1:15:16from that for that reason. I like things
1:15:18like e the natural logarithm and I like
1:15:21things like Fenbomb's constant like what
1:15:23mathematic what what constant of physics
1:15:25would you tweak to get a different
1:15:27Fenbomb's con like good luck to you. So,
1:15:29so what so but but beyond that my
1:15:33suspicion is that the kinds of things
1:15:35that mathematicians study are only one
1:15:37sort of the bottom layer of that space.
1:15:39I think that space has other patterns in
1:15:41it that are not static patterns like the
1:15:43value of E and things like that. They
1:15:46are uh behavioral policies. there are
1:15:48dynamic behavioral policies that we
1:15:50would recognize as kinds of minds and
1:15:52that when you make embodiment you pull
1:15:54down some of these patterns that end up
1:15:56being behavioral traits uh behavioral
1:15:59competencies goal states and so on that
1:16:02uh that are going to basically inhabit
1:16:04the physical interface that you made.
1:16:06Now the thing with biology is that uh
1:16:09it's very complex and you can never
1:16:10really prove anything because there's
1:16:12always more. Somebody's always going to
1:16:13be like, well, maybe there's quantum
1:16:14microtubules that you never like you can
1:16:17never know that you've got all the
1:16:18mechanisms. So, what we've been doing is
1:16:21making minimal computational models,
1:16:24very minimal small computational models
1:16:26where you know exactly what you've put
1:16:28in and what you got out and you can
1:16:30quantify it because there is no extra
1:16:31mechanism. There is no magic. You can
1:16:33see all the steps. And so we had one
1:16:35paper on this last year and we have half
1:16:37a dozen more coming uh coming this year
1:16:39on different uh versions of this the
1:16:42simplest version that we published but
1:16:44we have an even simpler version coming
1:16:46out for for shock value. I like it when
1:16:47they're tiny because the shock value uh
1:16:50you know lots of people think that well
1:16:53I'm a human. My story is not told by the
1:16:56laws of biochemistry. I there's more to
1:16:58me than just the mechanical laws of
1:16:59biochemistry. But but don't worry that's
1:17:01okay because over here we have these
1:17:02dumb machines and the and the story of
1:17:04dumb machines are absolut is absolutely
1:17:06told by our formal models of of touring
1:17:09you know computation and all of that
1:17:10they they do exactly what our formal
1:17:12models say no more no less we somehow a
1:17:14little bit more than that
1:17:16>> um so so so my thought is that it's not
1:17:18only us that uh are are benefiting from
1:17:21these and evolution that's benefiting
1:17:23from the free lunches from that platonic
1:17:25space it's everything including the dumb
1:17:27machines so so our first so our first
1:17:30model was sorting algorithms. So bubble
1:17:32sort
1:17:32>> mhm
1:17:34>> less than six lines of code there's no
1:17:35you can see exactly it's deterministic
1:17:37you can see everything there is
1:17:38>> and what you see and and and people have
1:17:40been studying that for what 80 years
1:17:42everybody's been been you know every CS
1:17:44101 student has been playing with it
1:17:46>> what we found is that
1:17:48>> yeah it sorts numbers all right but if
1:17:50you if you look at it from a slightly
1:17:52different perspective and you ask what
1:17:54else might it be doing nobody asked that
1:17:56because because you can see the steps so
1:17:58it shouldn't be doing anything else
1:18:00because the al because we have this idea
1:18:01that it does what the algorithm tells it
1:18:03to do just like we think well the laws
1:18:05of physics kind of constrain what we do
1:18:06but but we can kind of do more
1:18:08interesting things but but this thing
1:18:10should just do what the algorithm says.
1:18:12Turns out no they do other things and
1:18:14some of these other things are not just
1:18:17it's not just complexity. It's not just
1:18:18unpredictability. It's not just perverse
1:18:20instantiation. It's competencies that
1:18:23are recognizable to any behavioral
1:18:25scientist. In other words, what's
1:18:26emerging?
1:18:27>> What does bubble sort do?
1:18:28>> What it does two things? It does delayed
1:18:30gratification which which I can
1:18:32describe. It does clustering. Um so so
1:18:34delayed gratification. So imagine
1:18:36imagine um uh sorting sorting numbers.
1:18:39You can you can plot uh and I I can send
1:18:42you a a link to this. Um Andrea Morris
1:18:45from Forbes did an hour and a half
1:18:47discussion with me on this because it
1:18:48was so like in like why why does Forbes
1:18:50want to hear about this? Because it
1:18:51actually has massive implications for um
1:18:54for how we understand uh IP and computer
1:18:56science and and beyond that. Uh imagine
1:18:59imagine um looking at uh how sorted is
1:19:03my array at any given point. Right? So
1:19:05as you sort it just keeps going up and
1:19:07up and because bubble sort is guaranteed
1:19:08to to to converge. Eventually you get to
1:19:10it's 100% sorted, right? Guaranteed.
1:19:12>> Imagine if imagine if you introduce um
1:19:15broken numbers brok the standard version
1:19:17of bubble sort there's no code to see if
1:19:19if it worked. I tell the four and the
1:19:21six to flip. I don't check to see if it
1:19:23has. I assume it's a reliable medium. I
1:19:25assume suppose you introduce a broken
1:19:27number. What's a broken number? Well,
1:19:28the algorithm says to swap. I don't
1:19:30move. I'm glued down. I can't move.
1:19:32Okay, there's no code. We don't change
1:19:33the bubble story. In other words, we we
1:19:35didn't add any code to see well what
1:19:36happens if the number doesn't work. You
1:19:37don't do that. First of all, first of
1:19:40all, still works. Okay, and there's no
1:19:42extra code to handle these broken
1:19:43things. Still works. Still still sorts
1:19:45it. What it does is it sorts all the
1:19:46numbers around it. Okay, so still works.
1:19:49But the really amazing thing is that if
1:19:52you look at how sorted is my array, in
1:19:55order to do that, you have to unsort.
1:19:57You have to go backwards. If you have a
1:19:59broken number, you can't just keep
1:20:00monotonically rising. You have to
1:20:02temporarily unsort then recoup gains
1:20:04later as you move stuff around. That's
1:20:06behavioral scientists call it delay
1:20:07gratification. It's like imagine two
1:20:09magnets on either side of a piece of
1:20:11wood.
1:20:11>> They want to get at each other, but
1:20:13they're too dumb to go around because
1:20:14they would have to go against the
1:20:15gradient. They'd have to get further in
1:20:16order. They're not smart enough to do
1:20:18that. Uh but but but most animals can.
1:20:21So So right. So if you make a thing,
1:20:22they'll they'll they'll come around
1:20:23temporarily away from your goal to get
1:20:25to recoup, right? That's that's called
1:20:26that's delay gratification. Bubble sort
1:20:28will desort the whole array. It'll
1:20:30actually go backwards in order to then
1:20:32get its problem solved later on.
1:20:34>> There is no code for that. You can you
1:20:36see the code. There isn't any code for
1:20:37that. So on the one hand, you could say,
1:20:40well, yeah, any you know, anything has
1:20:42consequences that aren't directly in the
1:20:44code. Sure. But there's two things going
1:20:45on here. This is a minimal system. Of
1:20:47course, there's there's lot much bigger
1:20:48versions of this. But first of all, the
1:20:50whole point of of writing a computer
1:20:52algorithm is meant to specify the steps
1:20:54that you think you've carried out. That
1:20:56is exactly what it does. And the extra
1:20:58stuff that it does
1:21:00>> is not just complexity. It's not just,
1:21:02you know, some some random side product.
1:21:05It is a behavioral competency that you
1:21:07can make use of. I have a whole, you
1:21:08know, sort of business plan in my head
1:21:09of how you can actually, you know, you
1:21:11could charge for that. So at the same
1:21:13time and there are no extra steps.
1:21:14There's no magic. You didn't you didn't
1:21:16change the way the CPU works. It isn't
1:21:18it's still deterministic. It's not some
1:21:19quantum thing. Uh it is it is um the the
1:21:23ability of of of
1:21:25interesting patterns and some of these
1:21:27patterns are static but some of them are
1:21:29behavioral tendencies to ingress into
1:21:31things that we think of were specified
1:21:33whether by the laws of physics,
1:21:35chemistry or or or algorithms. In the
1:21:38spaces between the chance and necessity,
1:21:40there are spaces for these things to
1:21:41squeeze in and they can occupy I think
1:21:43all
1:21:46sort of the whole spectrum of complexity
1:21:48from very static things like e to very
1:21:50complex things that could be kinds of
1:21:52minds.
1:21:53>> So it's very hard to boil biology down
1:21:55to these kinds of simple algorithms
1:21:56because you have all these hidden
1:21:57variables and things you don't know on
1:21:58the cellular level. But I'm curious if
1:22:00you have an idea for like a model
1:22:03system, biological system that could
1:22:04like falsify or prove this idea of
1:22:07having like these platonic
1:22:09>> patter
1:22:11falsify. That's easier maybe.
1:22:13>> Well, nobody nobody's ever proved or
1:22:14falsified really anything in biology
1:22:16because it's too hard to read
1:22:17definitively to do that the way you can
1:22:19in with the computational systems. But I
1:22:21but I will say that uh I think I think
1:22:24and it's not that I think the xenobots
1:22:26or anthropots prove platonism. I you
1:22:28know that's not how it works. But I do
1:22:30think that the more we study these
1:22:31things and there's a bunch more papers
1:22:33coming uh soon. The more the more you
1:22:36realize that there are competencies here
1:22:37that we do not have a conventional story
1:22:40of origin for you have to do one of two
1:22:42things. You have to either say like most
1:22:44people they shrug. They say these are
1:22:46these are just regularities that hold in
1:22:48our world and they say well is do they
1:22:50come from a random bag of regularities
1:22:53like I I don't you know I think that's a
1:22:56very pessimistic approach. I think no it
1:22:58should be we should assume that there
1:22:59there's a structured latent space that
1:23:01we can study and so there it is. That's
1:23:03all I'm that's all I'm saying. Um but
1:23:05but the other the other thing is that uh
1:23:08we have to uh we have to I think uh
1:23:11adjust the way that we calculate uh
1:23:15compute and cost and effort. You know
1:23:17when right right now uh and and I'm
1:23:20sorry I'm going to have to go in a
1:23:21minute but but right now there are three
1:23:23ways to have something that's competent.
1:23:25You can either design an algorithm
1:23:27meaning somebody else already knows how
1:23:28to solve the problem and they and they
1:23:30write down the steps. You can evolve it,
1:23:32meaning generate a trillion variants,
1:23:33throw away everything that doesn't work
1:23:35and keep what's left or you can learn
1:23:36that that same being has multiple
1:23:38encounters with the problem. Those are
1:23:40the only three ways and you have to put
1:23:41in effort. I I I think and we now have
1:23:44data that's that's that will be out soon
1:23:46showing that the way we account for that
1:23:48effort is is is wrong. We there there is
1:23:50there is at least one other place where
1:23:53you can get more than you put in. You
1:23:54can get more out than you put in.
1:23:56Exactly what do you get out? We're still
1:23:58working on that. uh be like figuring out
1:24:00where on the spectrum it is. But I think
1:24:03the way we we account for um for uh
1:24:07actionable information for intelligence
1:24:09coming into the world is we we we've
1:24:11been neglecting an important source of
1:24:12it and and our standard ways don't
1:24:14account for it.
1:24:15>> So as we wrap up here just two things.
Xenobots and Advice for Young Scientists
1:24:16One thing we've mentioned xenobots a
1:24:18lot. So if you could just define them so
1:24:20because maybe somebody listening doesn't
1:24:21know what this is just define them in
1:24:23one minute or something like that. So
1:24:24that so just to backfill that and then
1:24:26the second thing just to wrap up what's
1:24:28your advice for people that are entering
1:24:29research or science engineering early in
1:24:32their career how do they find their like
1:24:34weird area that's been neglected where
1:24:37they can you know apply their creativity
1:24:39>> right um okay zenobots are a self-motile
1:24:43uh creature that results when you
1:24:45liberate some uh epithelial cells from a
1:24:48frog embryo we don't change their
1:24:50genetics there are no weird nanom
1:24:52materials there are scaffolds. Uh the
1:24:55cells will reboot their
1:24:56multisellularity, go into a new
1:24:58configuration with uh novel gene
1:25:01expressions and all kinds of interesting
1:25:04behaviors. They make copies of
1:25:05themselves from loose cells that they
1:25:07find in the environment. Uh they they
1:25:09can learn. They have a they have a
1:25:10memory that we've characterized. Um
1:25:12yeah, and and anthrobots are similar.
1:25:13>> Do you drug them also with like
1:25:15bioelectric drugs?
1:25:16>> We're working on that. We haven't done
1:25:18that. We haven't.
1:25:20>> Oh yeah, for sure. For sure. We haven't
1:25:21we haven't published it yet, but we're
1:25:22absolutely working on that. Anthrobots
1:25:24are the same thing, but they come from
1:25:25human cells because because somebody
1:25:27said, well, you know, amphibian cells
1:25:29are plastic and an embryo and say, okay,
1:25:31what's the furthest we can get from an
1:25:33be an embryo? That would be an adult
1:25:34human. Okay, so exactly the same the
1:25:36same kind of thing. Um, yeah, these
1:25:38beings are amazing. Um, [snorts] to um
1:25:41uh advice for finding weird areas, uh,
1:25:44for I have I have I have a blog post
1:25:46that that goes into this in in
1:25:47considerably more detail. Also, if you
1:25:48want, you can you can send us I'll send
1:25:50you drop me an email because I'll forget
1:25:52by the time I get home. I'll forget.
1:25:53Send send me a link and I'll and I'll
1:25:54send it to you. But I have a blog post
1:25:56that outlines how you know what I think
1:25:59are useful useful ways to do it.
1:26:01>> Uh basically you can there are a few a
1:26:04few a few suggestions um reading widely
1:26:08and broadly so across disciplines. I
1:26:10think that that the boundaries between
1:26:12disciplines are largely fake and and and
1:26:14useless at this point. I mean like all
1:26:16the things that are single discipline
1:26:17have probably been done already. Um so
1:26:20so reading widely and broadly and uh
1:26:23continuously asking yourself about
1:26:26standard things that you read and and
1:26:28are told during the you know your
1:26:29education. What would things look like
1:26:32if this wasn't true? What would I be
1:26:33seeing if this was like what's the
1:26:35biggest way this could be wrong? And and
1:26:37what what would things you know what
1:26:39would things look like and what isn't in
1:26:41my textbook? Like here are the examples
1:26:42in the textbook. What isn't here and why
1:26:44isn't it here? And uh those kinds of
1:26:47things I think are are valuable to think
1:26:48about.
1:26:49>> Awesome. Thank you so much. This was
1:26:51great. Thank you so much. Yeah.
1:26:52>> Super fascinating work.
1:27:00>> [music]